>SHL262 (SHL262Q) /CSM/SH/SHL2-C/SHL262Q.Seq.d/
XXXXXXXXXXATTATGGTATACCACTTTCTATCAAAATACACTCAATGGTGCTCCAGTTA
TGAGACCACTTTGGGTTCAATATCCAAAAGAAGCCAATCTCTTTGATGTTGATGATCATT
ATTTAATTGGTGATTCACTTTTAGTTAAACCAGTCACTCAACAATCTTGTAAAACTATGA
AAGTCCTCTTACCAGGCCAAAGTGTCAATGAAATTTGGTATGATGTTGATACTGAGAAAC
CAATCAATGCTGGTGTCATCGAAATTGATACTCCTTTAGAAAAGGTTCCAGTTTATCAAC
GTGGTGGTTCAATCATTTCAAAGAAAGAAAGAGTTCGTAGAAGTACCTATCAAATGAGAG
ATGATCCATACACTATTCGTATCGCTTTGGACTCTTCAAAATCTGCTCAAGGTCAATTAT
ACATTGATGATGAACACTCTTTTGATTATAAAAAAGGTAAATTCCTCTACAGACAATTCA
CTTTCAAAGATAATGTTCTCTCATTTTCTGATGCCTCAAATAAGAGCTCAACCTCTTACA
AACCAAATGTTACCATTGAAAAAATCGTTATCCTTGGTGTTCAAAAACCTCACTCGATCA
T

---LWYTTFYQNTLNGAPVMRPLWVQYPKEANLFDVDDHYLIGDSLLVKPVTQQSCKTMK
VLLPGQSVNEIWYDVDTEKPINAGVIEIDTPLEKVPVYQRGGSIISKKERVRRSTYQMRD
DPYTIRIALDSSKSAQGQLYIDDEHSFDYKKGKFLYRQFTFKDNVLSFSDASNKSSTSYK
PNVTIEKIVILGVQKPHSI

Frame A:
---LWYTTFYQNTLNGAPVMRPLWVQYPKEANLFDVDDHYLIGDSLLVKPVTQQSCKTMK
VLLPGQSVNEIWYDVDTEKPINAGVIEIDTPLEKVPVYQRGGSIISKKERVRRSTYQMRD
DPYTIRIALDSSKSAQGQLYIDDEHSFDYKKGKFLYRQFTFKDNVLSFSDASNKSSTSYK
PNVTIEKIVILGVQKPHSI


Frame B:
---ygiplsikihsmvlql*dhfgfniqkkpislmlmiii*lvihf*lnqslnnlvkl*k
ssyqakvsmkfgmmlilrnqsmlvssklill*krfqfinvvvqsfqrkkefvevpik*em
ihtlfvslwtlqnllkvnytlmmntlliikkvnsstdnslskimfshflmpqiraqpltn
qmlplkkslslvfknltrs


Frame C:
---mvyhflskytqwcssyettlgsiskrsqsl*c**slfnw*ftfs*tshstil*nyes
pltrpkcq*nlv*c*y*etnqcwchrn*ysfrkgsslstwwfnhfkerkss*kylsner*
sihysyrfglfkicsrsiih***tlf*l*kr*iplqtihfqr*cslif*clk*elnllqt
kcyh*knrypwcsktsldh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL262 (SHL262Q) /CSM/SH/SHL2-C/SHL262Q.Seq.d/                       1172   0.0
VHK892 (VHK892Q) /CSM/VH/VHK8-D/VHK892Q.Seq.d/                       1154   0.0
AHN239 (AHN239Q) /CSM/AH/AHN2-B/AHN239Q.Seq.d/                       1154   0.0
AHM824 (AHM824Q) /CSM/AH/AHM8-A/AHM824Q.Seq.d/                       1154   0.0
AHL465 (AHL465Q) /CSM/AH/AHL4-C/AHL465Q.Seq.d/                       1154   0.0
AHF129 (AHF129Q) /CSM/AH/AHF1-B/AHF129Q.Seq.d/                       1154   0.0
VHA366 (VHA366Q) /CSM/VH/VHA3-C/VHA366Q.Seq.d/                       1146   0.0
VHB376 (VHB376Q) /CSM/VH/VHB3-D/VHB376Q.Seq.d/                       1138   0.0
SHA634 (SHA634Q) /CSM/SH/SHA6-B/SHA634Q.Seq.d/                       1102   0.0
SHA472 (SHA472Q) /CSM/SH/SHA4-C/SHA472Q.Seq.d/                       1084   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U72236|U72236.1 Dictyostelium discoideum ModA (modA) gene, complete cds.  1154   0.0    1
DV771667|DV771667.1 McClintock5_D06.ab1 Homarus EST library project Homarus americanus cDNA clone McClintock5_D06.ab1, mRNA sequence.    48   1e-05  3
CX994143| ENSANGP00000010269 - Anopheles gambiae. Score = 209 bits (532), Expect = 5e-53, mRNA sequence.    36   0.048  2
CX994233| ENSANGP00000010269 - Anopheles gambiae. Score = 199 bits (507), Expect = 4e-50, mRNA sequence.    36   0.048  2
CX994013| ModA - Dictyostelium discoideum. Score = 178 bits (451), Expect = 6e-44, mRNA sequence.    36   0.048  2
AC182280|AC182280.2 Bos taurus clone CH240-500D15, *** SEQUENCING IN PROGRESS ***, 40 unordered pieces.    36   0.14   2
AC111824|AC111824.4 Rattus norvegicus clone CH230-273I3, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    46   0.95   1
BZ245409|BZ245409.1 CH230-261K6.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-261K6, DNA sequence.    46   0.95   1
CK039850|CK039850.1 35766rsiceg_4824.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cDNA 5', mRNA sequence.    36   1.3    2
CL957770|CL957770.1 OsIRUA001884 Oryza sativa Express Library Oryza sativa (indica cultivar-group) genomic, genomic survey sequence.    36   1.3    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94502) RecName: Full=Neutral alpha-glucosidase AB;          EC...   400   e-110
BC148865_1(BC148865|pid:none) Bos taurus glucosidase, alpha; neu...   172   5e-42
BC130137_1(BC130137|pid:none) Xenopus laevis hypothetical protei...   171   2e-41
AK295899_1(AK295899|pid:none) Homo sapiens cDNA FLJ61290 complet...   169   4e-41
AK299819_1(AK299819|pid:none) Homo sapiens cDNA FLJ54057 complet...   169   4e-41
AF144074_1(AF144074|pid:none) Homo sapiens glucosidase II alpha ...   169   4e-41
BC017433_1(BC017433|pid:none) Homo sapiens glucosidase, alpha; n...   169   4e-41
BC152014_1(BC152014|pid:none) Danio rerio zgc:171967, mRNA (cDNA...   167   2e-40
AB173690_1(AB173690|pid:none) Macaca fascicularis brain cDNA clo...   167   2e-40
AB383744_1(AB383744|pid:none) Synthetic construct DNA, clone: pF...   167   2e-40

 psg: 0.83  gvh: 0.53  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHL262 is nuc

>SHL262Z.Seq
NNNNNNNNNNATTATGGTATACCACTTTCTATCAAAATACACTCAATGGTGCTCCAGTTA
TGAGACCACTTTGGGTTCAATATCCAAAAGAAGCCAATCTCTTTGATGTTGATGATCATT
ATTTAATTGGTGATTCACTTTTAGTTAAACCAGTCACTCAACAATCTTGTAAAACTATGA
AAGTCCTCTTACCAGGCCAAAGTGTCAATGAAATTTGGTATGATGTTGATACTGAGAAAC
CAATCAATGCTGGTGTCATCGAAATTGATACTCCTTTAGAAAAGGTTCCAGTTTATCAAC
GTGGTGGTTCAATCATTTCAAAGAAAGAAAGAGTTCGTAGAAGTACCTATCAAATGAGAG
ATGATCCATACACTATTCGTATCGCTTTGGACTCTTCAAAATCTGCTCAAGGTCAATTAT
ACATTGATGATGAACACTCTTTTGATTATAAAAAAGGTAAATTCCTCTACAGACAATTCA
CTTTCAAAGATAATGTTCTCTCATTTTCTGATGCCTCAAATAAGAGCTCAACCTCTTACA
AACCAAATGTTACCATTGAAAAAATCGTTATCCTTGGTGTTCAAAAACCTCACTCGATCA
T