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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL261
Library SH
(Link to library)
Clone ID SHL261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHL261P
(Link to Original site)
Representative DNA sequence 
>SHL261 (SHL261Q) /CSM/SH/SHL2-C/SHL261Q.Seq.d/
ATATGACAGTTTCAATTCCACCTCGTTATATCATTTCAAATTTCACCACTACTGGTTTAG
TCAACAATAGATTCTTCCCATTAAATCGTACAACACCAATATTCACAATGCCAGGACCAG
ATGTAGTAACTGTATCAAGTGTTAGTCGTTGTAGACAAGCGTACAACAAAGCCAATGTTG
GTATAAATACCCCATATGTTGCATTGGGTGTTAGAACCTTTATTGATACCAACAAGAATG
GTATCTTTGATATTGATGAAAAACCATTACCAAATGTTACTGTACTTCTCTTAAATAACA
ATGGTCAACCAGTTATGGGTTCAGATGGTAACCCATTGAAAGCAGTATCAAACTCTCAAG
GTTACTATTACATTGATAATGTACGTTTAGGTTATTATATCGTTCAATTTGTCATACCAG
CCGGTTATTCAATCACTCCAACCAAATTAGTGTCAACATCAAATCAAGTAGAAAACAATG
CATTCCCTAATGGTAGAACTGATGCATTTAATCTTATTATTACATCATCCGATATTCGTT
CAAGATTTGATAATGAATCAAATTTATATACAGCACCATACCTTGACCCTACTCATGATG
CAGGXXXXXXXXXXGATGGTAAATGTGGTGGTGCTATTGGTTCTCATACAGGTCCATCAG
GTTATAAAGGTCAAATTGAAGGTCCAGGTACTGGTGAATTCTATAATGATAACTTTAGAA
AAGGTCAAATTGGTCATGATGATACTGGTGGTCTTTCAGTTTTCCAAGTTCCAGGTTTCC
CAGAGGTTGCATCAGCTTCATTCGATGCTACAACTGTATTCGAAGGTGTAGTCAAATTTT
ATAACAATAACAATGGTACCCTTCGTTCTTCATTCCAAGTTTATCTCACTGATAATTCAG
ATACAGTCAATCCAGTTACCTTTGGCAAAGCATCGGGTCTTGGTCAACTTGTAGCCCACT
GTTCTCCAAAACCAATTACCCTTGGTAGTATTGTCTTTATTGATACAAATGGTAATGGTA
TTCAAGAACCATGGGAGCAAGGTAAACAAGGTGTTGCCGTTAGTTTATTATTTGCCAATG
GTACCTTAATTCAAAAACAATCAACCGATTCATTAGGTCTATTTAAATTCATTAATCCAC
CATACCAAAATCAACAATATATTATTACAGCTGATTCAGTTACACTTTCAATTATTCCAT
CACCTCTACCAACTTCATCTATTCCTTATAACGCTGCAACAATGGTTAAGGAAAAGCAAC
AATTTCAAATATTCTTATTTTAGATCCAATGATAGCTTCAAGTAGATA
sequence update 2002.10.25
Translated Amino Acid sequence 
MTVSIPPRYIISNFTTTGLVNNRFFPLNRTTPIFTMPGPDVVTVSSVSRCRQAYNKANVG
INTPYVALGVRTFIDTNKNGIFDIDEKPLPNVTVLLLNNNGQPVMGSDGNPLKAVSNSQG
YYYIDNVRLGYYIVQFVIPAGYSITPTKLVSTSNQVENNAFPNGRTDAFNLIITSSDIRS
RFDNESNLYTAPYLDPTHDA---

---DGKCGGAIGSHTGPSGYKGQIEGPGTGEFYNDNFRKGQIGHDDTGGLSVFQVPGFPE
VASASFDATTVFEGVVKFYNNNNGTLRSSFQVYLTDNSDTVNPVTFGKASGLGQLVAHCS
PKPITLGSIVFIDTNGNGIQEPWEQGKQGVAVSLLFANGTLIQKQSTDSLGLFKFINPPY
QNQQYIITADSVTLSIIPSPLPTSSIPYNAATMVKEKQQFQIFLF*iq**lqvd
Translated Amino Acid sequence (All Frames) 
Frame A:
i*qfqfhlvisfqispllv*stidssh*ivqhqysqcqdqm**lyqvlvvvdkrttkpml
v*iphmlhwvleplliptrmvslilmknhyqmllyfs*itmvnqlwvqmvth*kqyqtlk
vtitlimyv*viisfnlsyqpviqslqpn*cqhqik*ktmhslmvelmhlilllhhpifv
qdlimnqiyiqhhtltllmmq---

---DGKCGGAIGSHTGPSGYKGQIEGPGTGEFYNDNFRKGQIGHDDTGGLSVFQVPGFPE
VASASFDATTVFEGVVKFYNNNNGTLRSSFQVYLTDNSDTVNPVTFGKASGLGQLVAHCS
PKPITLGSIVFIDTNGNGIQEPWEQGKQGVAVSLLFANGTLIQKQSTDSLGLFKFINPPY
QNQQYIITADSVTLSIIPSPLPTSSIPYNAATMVKEKQQFQIFLF*iq**lqvd

Frame B:
ydsfnstslyhfkfhhywfsqq*ilpiksyntnihnartrcsncikc*sl*tsvqqsqcw
ykypiccigc*nly*yqqewyl*y**ktitkcyctslk*qwstsygfrw*piessiklsr
lllh**ctfrllyrsichtsrlfnhsnqisvnikssrkqcip*w*n*ci*syyyiirysf
ki***ikfiystip*pys*cr---

---mvnvvvllvliqvhqvikvklkvqvlvnsimitlekvklvmmilvvfqfskfqvsqr
lhqlhsmlqlyskv*snfititmvpfvlhskfisliiqiqsiqlplakhrvlvnl*ptvl
qnqlplvvlslliqmvmvfknhgskvnkvlplvyylpmvp*fknnqpih*vylnslihht
kinnillqliqlhfqlfhhlyqlhlflitlqqwlrksnnfkysyfrsndsfk*i

Frame C:
MTVSIPPRYIISNFTTTGLVNNRFFPLNRTTPIFTMPGPDVVTVSSVSRCRQAYNKANVG
INTPYVALGVRTFIDTNKNGIFDIDEKPLPNVTVLLLNNNGQPVMGSDGNPLKAVSNSQG
YYYIDNVRLGYYIVQFVIPAGYSITPTKLVSTSNQVENNAFPNGRTDAFNLIITSSDIRS
RFDNESNLYTAPYLDPTHDA---

---w*mwwcywfsyrsirl*rsn*rsryw*il***l*krsnws**ywwsfsfpssrfprg
cisfircyncirrcsqil*q*qwypsffipslsh**frysqssylwqsigswstcsplfs
ktnypw*ycly*ykw*wysrtmgar*trccr*fiicqwylnsktinrfirsi*ih*stip
kstiyyys*fsytfnysitstnfiysl*rcnng*gkatisnilildpmiassr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL261 (SHL261Q) /CSM/SH/SHL2-C/SHL261Q.Seq.d/                       2533   0.0
AHM802 (AHM802Q) /CSM/AH/AHM8-A/AHM802Q.Seq.d/                       1376   0.0
AFH471 (AFH471Q) /CSM/AF/AFH4-C/AFH471Q.Seq.d/                       1374   0.0
AHL842 (AHL842Q) /CSM/AH/AHL8-B/AHL842Q.Seq.d/                       1368   0.0
AHK833 (AHK833Q) /CSM/AH/AHK8-B/AHK833Q.Seq.d/                       1368   0.0
SHF801 (SHF801Q) /CSM/SH/SHF8-A/SHF801Q.Seq.d/                       1362   0.0
SHF628 (SHF628Q) /CSM/SH/SHF6-B/SHF628Q.Seq.d/                       1362   0.0
AHQ741 (AHQ741Q) /CSM/AH/AHQ7-B/AHQ741Q.Seq.d/                       1362   0.0
AHO725 (AHO725Q) /CSM/AH/AHO7-B/AHO725Q.Seq.d/                       1362   0.0
AHO237 (AHO237Q) /CSM/AH/AHO2-B/AHO237Q.Seq.d/                       1362   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strainAX4, complete sequence.    48   0.019  9
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    40   0.24   18
AC186913|AC186913.1 Microcebus murinus clone CH257-228N23, WORKING DRAFT SEQUENCE, 15 unordered pieces.    48   0.53   1
CT737252|CT737252.2 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH242-71A15.    48   0.53   1
AC174974|AC174974.2 Bos taurus clone CH240-173C6, WORKING DRAFT SEQUENCE, 24 unordered pieces.    46   2.1    1
AC160363|AC160363.2 Bos taurus clone CH240-88I19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   2.1    1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    46   2.1    1
AC168519|AC168519.2 Strongylocentrotus purpuratus clone R3-3108E4, WORKING DRAFT SEQUENCE, 34 unordered pieces.    44   6.1    2
AC161614|AC161614.4 Pan troglodytes BAC clone CH251-575E11 from chromosome unknown, complete sequence.    40   8.0    3
CX675351|CX675351.1 UCRCS08_61F10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61F10-L19-1-6.b, mRNA sequence.    44   8.3    1
dna update 2006. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    85   6e-15
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    82   3e-14
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    80   2e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    74   9e-12
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    74   1e-11
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD...    68   8e-10
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    67   1e-09
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    67   1e-09
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    67   1e-09
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    67   1e-09
protein update 2009. 5.30
PSORT 

 psg: 0.85  gvh: 0.49  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SHL261 is mit
5' end seq. ID SHL261F
5' end seq. 
>SHL261F.Seq
ATATGACAGTTTCAATTCCACCTCGTTATATCATTTCAAATTTCACCACTACTGGTTTAG
TCAACAATAGATTCTTCCCATTAAATCGTACAACACCAATATTCACAATGCCAGGACCAG
ATGTAGTAACTGTATCAAGTGTTAGTCGTTGTAGACAAGCGTACAACAAAGCCAATGTTG
GTATAAATACCCCATATGTTGCATTGGGTGTTAGAACCTTTATTGATACCAACAAGAATG
GTATCTTTGATATTGATGAAAAACCATTACCAAATGTTACTGTACTTCTCTTAAATAACA
ATGGTCAACCAGTTATGGGTTCAGATGGTAACCCATTGAAAGCAGTATCAAACTCTCAAG
GTTACTATTACATTGATAATGTACGTTTAGGTTATTATATCGTTCAATTTGTCATACCAG
CCGGTTATTCAATCACTCCAACCAAATTAGTGTCAACATCAAATCAAGTAGAAAACAATG
CATTCCCTAATGGTAGAACTGATGCATTTAATCTTATTATTACATCATCCGATATTCGTT
CAAGATTTGATAATGAATCAAATTTATATACAGCACCATACCTTGACCCTACTCATGATG
CAGGNNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID SHL261Z
3' end seq. 
>SHL261Z.Seq
NNNNNNNNNNGATGGTAAATGTGGTGGTGCTATTGGTTCTCATACAGGTCCATCAGGTTA
TAAAGGTCAAATTGAAGGTCCAGGTACTGGTGAATTCTATAATGATAACTTTAGAAAAGG
TCAAATTGGTCATGATGATACTGGTGGTCTTTCAGTTTTCCAAGTTCCAGGTTTCCCAGA
GGTTGCATCAGCTTCATTCGATGCTACAACTGTATTCGAAGGTGTAGTCAAATTTTATAA
CAATAACAATGGTACCCTTCGTTCTTCATTCCAAGTTTATCTCACTGATAATTCAGATAC
AGTCAATCCAGTTACCTTTGGCAAAGCATCGGGTCTTGGTCAACTTGTAGCCCACTGTTC
TCCAAAACCAATTACCCTTGGTAGTATTGTCTTTATTGATACAAATGGTAATGGTATTCA
AGAACCATGGGAGCAAGGTAAACAAGGTGTTGCCGTTAGTTTATTATTTGCCAATGGTAC
CTTAATTCAAAAACAATCAACCGATTCATTAGGTCTATTTAAATTCATTAATCCACCATA
CCAAAATCAACAATATATTATTACAGCTGATTCAGTTACACTTTCAATTATTCCATCACC
TCTACCAACTTCATCTATTCCTTATAACGCTGCAACAATGGTTAAGGAAAAGCAACAATT
TCAAATATTCTTATTTTAGATCCAATGATAGCTTCAAGTAGATA
Length of 3' end seq. 704
Connected seq. ID SHL261P
Connected seq. 
>SHL261P.Seq
ATATGACAGTTTCAATTCCACCTCGTTATATCATTTCAAATTTCACCACTACTGGTTTAG
TCAACAATAGATTCTTCCCATTAAATCGTACAACACCAATATTCACAATGCCAGGACCAG
ATGTAGTAACTGTATCAAGTGTTAGTCGTTGTAGACAAGCGTACAACAAAGCCAATGTTG
GTATAAATACCCCATATGTTGCATTGGGTGTTAGAACCTTTATTGATACCAACAAGAATG
GTATCTTTGATATTGATGAAAAACCATTACCAAATGTTACTGTACTTCTCTTAAATAACA
ATGGTCAACCAGTTATGGGTTCAGATGGTAACCCATTGAAAGCAGTATCAAACTCTCAAG
GTTACTATTACATTGATAATGTACGTTTAGGTTATTATATCGTTCAATTTGTCATACCAG
CCGGTTATTCAATCACTCCAACCAAATTAGTGTCAACATCAAATCAAGTAGAAAACAATG
CATTCCCTAATGGTAGAACTGATGCATTTAATCTTATTATTACATCATCCGATATTCGTT
CAAGATTTGATAATGAATCAAATTTATATACAGCACCATACCTTGACCCTACTCATGATG
CAGG----------GATGGTAAATGTGGTGGTGCTATTGGTTCTCATACAGGTCCATCAG
GTTATAAAGGTCAAATTGAAGGTCCAGGTACTGGTGAATTCTATAATGATAACTTTAGAA
AAGGTCAAATTGGTCATGATGATACTGGTGGTCTTTCAGTTTTCCAAGTTCCAGGTTTCC
CAGAGGTTGCATCAGCTTCATTCGATGCTACAACTGTATTCGAAGGTGTAGTCAAATTTT
ATAACAATAACAATGGTACCCTTCGTTCTTCATTCCAAGTTTATCTCACTGATAATTCAG
ATACAGTCAATCCAGTTACCTTTGGCAAAGCATCGGGTCTTGGTCAACTTGTAGCCCACT
GTTCTCCAAAACCAATTACCCTTGGTAGTATTGTCTTTATTGATACAAATGGTAATGGTA
TTCAAGAACCATGGGAGCAAGGTAAACAAGGTGTTGCCGTTAGTTTATTATTTGCCAATG
GTACCTTAATTCAAAAACAATCAACCGATTCATTAGGTCTATTTAAATTCATTAATCCAC
CATACCAAAATCAACAATATATTATTACAGCTGATTCAGTTACACTTTCAATTATTCCAT
CACCTCTACCAACTTCATCTATTCCTTATAACGCTGCAACAATGGTTAAGGAAAAGCAAC
AATTTCAAATATTCTTATTTTAGATCCAATGATAGCTTCAAGTAGATA
Length of connected seq. 1298
Full length Seq ID -
Full length Seq. -
Length of full length seq. -