SHL257
Library SH
(Link to library)
Clone ID SHL257
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHL257P
(Link to Original site)
Representative DNA sequence
>SHL257 (SHL257Q) /CSM/SH/SHL2-C/SHL257Q.Seq.d/
ATTTATTATATTATTATTTTTTTCTCAATAAATTAATATTTCTTTGTATTTCTTTTTATA
TTATTCATTAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAAAXXXXXXXXXX
TGATCATTACATTTTTAGTTATGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGA
TCAAGATTTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTTCAGTTTGTTG
TGGTAAATTCAGTTCAGATANAACCATTAAANAGTATGNTCAACAAATTTGGGGTATTGA
ANAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAATGAANAAGNTNGTTNTTTATTAGT
TCCNCCNCCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAAGATTATCNCC
TTTAACTTTTGTTAAACAAACTTTTGNTTTTCCATTATCTGTTATCTNTGGTGGTGATAA
AACCAACAACNCTTTAAAACCAAAACAAAC
sequence update 2002.10.25
Translated Amino Acid sequence
llyyyfflnkliflcisfyiih*KKKNKKKTKXKKK---

---DHYIFSYDFGXYLDIQNSIDQDFKXXXKWXKKSIMXSVCCGKFSSDXTIKXYXQQIW
GIEXWXRPGPVPVSNEXXXXLLVPPPFGSPNDINXISIERLSPLTFVKQTFXFPLSVIXG
GDKTNNXLKPKQ


Translated Amino Acid sequence (All Frames)
Frame A:
iyyiiiffsin*yffvflfilfikkkkikkkpx*kk---

---*slhf*l*fwxllgyskfn*srfqxxx*mg*kinygfsllw*iqfrxnh*xvxstnl
gy*xmextrssssfk*xxxxfissxxiwfxk*yqxyfn*kiixfnfc*tnfxfsiicylw
w**nqqxfktktn

Frame B:
fiillffsq*inislyfflyyslkkkk*kknqxkkk---

---DHYIFSYDFGXYLDIQNSIDQDFKXXXKWXKKSIMXSVCCGKFSSDXTIKXYXQQIW
GIEXWXRPGPVPVSNEXXXXLLVPPPFGSPNDINXISIERLSPLTFVKQTFXFPLSVIXG
GDKTNNXLKPKQ

Frame C:
llyyyfflnkliflcisfyiih*KKKNKKKTKXKKK---

---iitflvmilvxtwifkiqlikisxixxngxknqlwxqfvvvnsvqixplxsmxnkfg
vlxngxdqvqfqfqmxkxvxy*fxxhlvxqmismxfqlkdyxl*lllnkllxfhyllsxv
vikpttl*nqnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL257 (SHL257Q) /CSM/SH/SHL2-C/SHL257Q.Seq.d/ 636 0.0
AHQ201 (AHQ201Q) /CSM/AH/AHQ2-A/AHQ201Q.Seq.d/ 613 e-174
AHL182 (AHL182Q) /CSM/AH/AHL1-D/AHL182Q.Seq.d/ 613 e-174
AHA895 (AHA895Q) /CSM/AH/AHA8-D/AHA895Q.Seq.d/ 613 e-174
SHA595 (SHA595Q) /CSM/SH/SHA5-D/SHA595Q.Seq.d/ 611 e-174
CHO516 (CHO516Q) /CSM/CH/CHO5-A/CHO516Q.Seq.d/ 611 e-174
AHQ446 (AHQ446Q) /CSM/AH/AHQ4-B/AHQ446Q.Seq.d/ 611 e-174
AHB385 (AHB385Q) /CSM/AH/AHB3-D/AHB385Q.Seq.d/ 611 e-174
SHB304 (SHB304Q) /CSM/SH/SHB3-A/SHB304Q.Seq.d/ 607 e-173
SHA827 (SHA827Q) /CSM/SH/SHA8-B/SHA827Q.Seq.d/ 607 e-173

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M77492|M77492.1 Dictyostelium discoideum glycoprotein phosphorylase 2 (glpD) gene, complete cds. 597 e-166 1
AF506028|AF506028.1 Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence. 42 0.63 4
CC243577|CC243577.1 CH261-84N3_Sp6.1 CH261 Gallus gallus genomic clone CH261-84N3, DNA sequence. 46 0.80 1
AC156821|AC156821.2 Bos taurus clone CH240-60M1, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces. 38 1.1 2
BX571794|BX571794.22 Zebrafish DNA sequence from clone DKEY-246M18 in linkage group 15. 44 3.2 1

dna update 2006. 7. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU165056_1(EU165056|pid:none) Cyanophora paradoxa starch phospho... 65 9e-10
CP000584_198(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 65 1e-09
AK103367_1(AK103367|pid:none) Oryza sativa Japonica Group cDNA c... 64 2e-09
AF326977_1(AF326977|pid:none) Oryza sativa alpha 1,4-glucan phos... 64 2e-09
EF576564_1(EF576564|pid:none) Oryza sativa (indica cultivar-grou... 64 2e-09
(Q9LKJ3) RecName: Full=Alpha-glucan phosphorylase, H isozyme; ... 64 2e-09
CP001330_331(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 63 3e-09
AY098895_1(AY098895|pid:none) Citrus hybrid cultivar starch phos... 63 3e-09
CR954204_212(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 63 4e-09
EU857639_1(EU857639|pid:none) Zea mays starch phosphorylase 2 pr... 62 1e-08
protein update 2009. 5.30
PSORT

psg: 0.52 gvh: 0.38 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHL257 is cyt

5' end seq. ID SHL257F
5' end seq.
>SHL257F.Seq
ATTTATTATATTATTATTTTTTTCTCAATAAATTAATATTTCTTTGTATTTCTTTTTATA
TTATTCATTAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 120
3' end seq. ID SHL257Z
3' end seq.
>SHL257Z.Seq
NNNNNNNNNNTGATCATTACATTTTTAGTTATGATTTTGGTTNTTACTTGGATATTCAAA
ATTCAATTGATCAAGATTTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTT
CAGTTTGTTGTGGTAAATTCAGTTCAGATANAACCATTAAANAGTATGNTCAACAAATTT
GGGGTATTGAANAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAATGAANAAGNTNGTT
NTTTATTAGTTCCNCCNCCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAA
GATTATCNCCTTTAACTTTTGTTAAACAAACTTTTGNTTTTCCATTATCTGTTATCTNTG
GTGGTGATAAAACCAACAACNCTTTAAAACCAAAACAAAC
Length of 3' end seq. 400
Connected seq. ID SHL257P
Connected seq.
>SHL257P.Seq
ATTTATTATATTATTATTTTTTTCTCAATAAATTAATATTTCTTTGTATTTCTTTTTATA
TTATTCATTAAAAAAAAAAAAATAAAAAAAAAACCAAANTAAAAAAAAAA----------
TGATCATTACATTTTTAGTTATGATTTTGGTTNTTACTTGGATATTCAAAATTCAATTGA
TCAAGATTTCAAANATANAGNTAAATGGGNTAAAAAATCAATTATGGNTTCAGTTTGTTG
TGGTAAATTCAGTTCAGATANAACCATTAAANAGTATGNTCAACAAATTTGGGGTATTGA
ANAATGGAANAGACCAGGTCCAGTTCCAGTTTCAAATGAANAAGNTNGTTNTTTATTAGT
TCCNCCNCCATTTGGTTCNCCAAATGATATCAATGNTATTTCAATTGAAAGATTATCNCC
TTTAACTTTTGTTAAACAAACTTTTGNTTTTCCATTATCTGTTATCTNTGGTGGTGATAA
AACCAACAACNCTTTAAAACCAAAACAAAC
Length of connected seq. 500
Full length Seq ID -
Full length Seq. -
Length of full length seq. -