NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL254
Library SH
(Link to library)
Clone ID SHL254
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13302-1|Contig-U16357-1
Original site URL
Representative seq. ID SHL254P
(Link to Original site)
Representative DNA sequence 
>SHL254 (SHL254Q) /CSM/SH/SHL2-C/SHL254Q.Seq.d/
TTGTGAAGGTGGTTATTATAAAATTTTAAAAACTCTACATTCATGGGAGAATTCATTAAG
TTGGGGTAATTGGTTAGTAACAACGAATGCGATGGATAAAGCAGCCGAAAAAGGTCATCT
CAATATCGTCAAATTCTTAATGAACAACAGAAATGAGGGTTGCACTGAAAATGCAATAAT
CAATGCCTCAAAGAATGGTCATTACGATGTTGTAGTTTATTTAGCACATAAAAATAAACC
AATATCTCCACAAGCTTTAGATTTAGCTTCAACATTTGGTTTTATTAAAATCTTATCTTT
TCTTTTCTTTTTCTTAGTTAAAATCATTCACTACAATGATAATATACAACCAAAAAGATT
CTCAATTGAGGACATTCCAACTTTAAAATCAAAATCAAAATCAAAGAAAAAGAAAAAATC
AACATCTTCATCAACTTCTACAACAACACCAATAACAACAATACCATTAATTAATAATTC
ACAATTAATAACTATTGTTACATTAACACAACAACAAACTAATCCAATAATTGTACCATC
ATTAAGAGAACCAAATGTTATTAAAACATGGATGGAAACTTTAGGAATGTGTAAXXXXXX
XXXXACCNCCTTCNTCCAGTTCAAGTANCGGAACCCAATTTCCAAATGAANNGGTTTCAT
TTTANNCTTNTATTGGAAACCCNATTTTGNNATGATTTTAGGCGCATTNGGATAAGNATT
ATANTTTAGNGATTTTATCNAATATTAAAGTAGTTAGTGATCATAGTGAGTCATTCATTG
ANGCCATATATTAGTNTANATTGTAAAGGTTATGATTAGATTAANNAGAAATTGTTTATC
ACAAGATTTATGATGGTGGTANTGGTTCATGGGCAAATAAACCATTGTCATCTAGTGGTT
CGNGCNTCACAAGTNTGGTGGTGCTTCTNTAGCTGCCTCCAGTGCNTGNAATGTAGTGGT
AAAGAATGTCNAATTCAGAGATTATTAGTGGTNTTTGTAAAACGTTATGGATTCTTAAAA
ANTATATCAACATAATTAAGATTCAGATCAAAGNAATGCTTTCATTCAATCTTTATTAGT
TTNAATTNNACGTAGTAANGATGTTGANNTNNTATTTGAANTNATNAAGGNNGTTGATTA
GGAATTTCAATTTCACCATCACCATCACCTTATNCANCTGCCAGTAGTCANAGAAACATC
TATTCCATCCACNACANCAACANCNNNTNCAGCAGCAGCAACATCAACAAGTTACTACTC
CATATACAACNNNTACAGCAGCAACANCANCCACTGCTCCAACTACGGCAGAGTCAACAA
CAACACCAGTATCATCGACAACAACAACCGAACAATCATCAGATTCATCATCATTACCAC
CACCTCCTCCAGTTCAAGTAACAAAACCAATTCCAAATGAAATGGTTTCATTTTATACTT
TTATTGGAACCCAATTTGAAAGATTTTAGGCGCATTCGATAAGAATTATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
CEGGYYKILKTLHSWENSLSWGNWLVTTNAMDKAAEKGHLNIVKFLMNNRNEGCTENAII
NASKNGHYDVVVYLAHKNKPISPQALDLASTFGFIKILSFLFFFLVKIIHYNDNIQPKRF
SIEDIPTLKSKSKSKKKKKSTSSSTSTTTPITTIPLINNSQLITIVTLTQQQTNPIIVPS
LREPNVIKTWMETLGMC---

---XLXPVQVXEPNFQMXXFHFXLXLETXFXXDFRRIXIXIIX*xfyxilk*lviivshs
lxpyisxxckgyd*ixxklfitrfmmvvxvhgqinhchlvvrasqvwwcfxsclqcxxcs
gkecxiqrllvvfvkrygflkxist*lrfrskxcfhsifisxnxt**xc*xxi*xxxgx*
lgisispspspyxxassxrniysihxxnxxxsssninklllhiqxxqqqxxpllqlrqsq
qqhqyhrqqqpnnhqihhhyhhllqfk*qnqfqmkwfhfilllepnlkdfrrir*el*
Translated Amino Acid sequence (All Frames) 
Frame A:
l*rwll*nfknstfmgefiklg*lvsnnecdg*ssrkrssqyrqilneqqk*glh*kcnn
qclkewslrccslfst*k*tnistsfrfsfniwfy*nlifsflfls*nhslq**yttkki
ln*ghsnfkikikikekekinifinfynntnnnntin**ftinnycyintttn*snncti
ikrtkcy*nmdgnfrnv*---

---txfxqfkxrnpisk*xgfilxxywkpxfxmilgaxg*xlxfxdfixy*ss**s**vi
h*xhilvxivkvmirlxrnclsqdl*wwxwfmgk*tivi*wfxxhkxggasxaassaxnv
vvknvxfrdy*wxl*nvmds*kxyqhn*dsdqxnafiqsllvxixrsxdvxxxfexxkxv
d*efqfhhhhhlxxlpvvxetsipsttxtxxxaaatstsyysiynxyssnxxhcsnygrv
nnntsiidnnnrtiirfiiitttsssssnktnsk*ngfilyfywnpi*kilgafdkny

Frame B:
CEGGYYKILKTLHSWENSLSWGNWLVTTNAMDKAAEKGHLNIVKFLMNNRNEGCTENAII
NASKNGHYDVVVYLAHKNKPISPQALDLASTFGFIKILSFLFFFLVKIIHYNDNIQPKRF
SIEDIPTLKSKSKSKKKKKSTSSSTSTTTPITTIPLINNSQLITIVTLTQQQTNPIIVPS
LREPNVIKTWMETLGMC---

---ppsssssxgtqfpnexvsfxxxignpilx*f*ahxdkxyxlxilsnikvvsdhsesf
ixaiy*xxl*rl*ld*xeivyhkiydggxgswankplsssgsxxtsxvvll*lppvxxm*
w*rmsnseiisgxcktlwilkxyiniikiqikxmlsfnly*fxxxvvxmlxxylxxxrxl
irnfnftititlxxcq*sxkhlfhpxxqxxxqqqqhqqvttpyttxtaatxxtapttaes
tttpvsstttteqssdssslpppppvqvtkpipnemvsfytfigtqferf*ahsirii

Frame C:
vkvviikf*klyihgrih*vgvig**qrmrwikqpkkvisissns**ttemrvalkmq*s
mpqrmvitml*fi*hikinqylhkl*i*lqhlvllksylffsfs*lksfttmiiynqkds
qlrtfql*nqnqnqrkrknqhlhqllqqhq*qqyh*liihn**lllh*hnnkliq*lyhh
*enqmllkhgwkl*ecv---

---XLXPVQVXEPNFQMXXFHFXLXLETXFXXDFRRIXIXIIX*xfyxilk*lviivshs
lxpyisxxckgyd*ixxklfitrfmmvvxvhgqinhchlvvrasqvwwcfxsclqcxxcs
gkecxiqrllvvfvkrygflkxist*lrfrskxcfhsifisxnxt**xc*xxi*xxxgx*
lgisispspspyxxassxrniysihxxnxxxsssninklllhiqxxqqqxxpllqlrqsq
qqhqyhrqqqpnnhqihhhyhhllqfk*qnqfqmkwfhfilllepnlkdfrrir*el*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL254 (SHL254Q) /CSM/SH/SHL2-C/SHL254Q.Seq.d/                       1711   0.0
SFH170 (SFH170Q) /CSM/SF/SFH1-C/SFH170Q.Seq.d/                        585   e-166
CHP454 (CHP454Q) /CSM/CH/CHP4-C/CHP454Q.Seq.d/                        349   8e-95
SHC413 (SHC413Q) /CSM/SH/SHC4-A/SHC413Q.Seq.d/                         42   0.024
CFK413 (CFK413Q) /CSM/CF/CFK4-A/CFK413Q.Seq.d/                         42   0.024
AHO276 (AHO276Q) /CSM/AH/AHO2-D/AHO276Q.Seq.d/                         42   0.024
AHM522 (AHM522Q) /CSM/AH/AHM5-A/AHM522Q.Seq.d/                         42   0.024
AHK526 (AHK526Q) /CSM/AH/AHK5-B/AHK526Q.Seq.d/                         42   0.024
AHC395 (AHC395Q) /CSM/AH/AHC3-D/AHC395Q.Seq.d/                         42   0.024
AFM378 (AFM378Q) /CSM/AF/AFM3-D/AFM378Q.Seq.d/                         42   0.024
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF128526|AF128526.1 Theileria lestoquardi sporozoite antigen SLAg1 (SLAg1) gene, complete cds.    58   6e-04  1
BU994066|BU994066.1 HM05J16r HM Hordeum vulgare subsp. vulgare cDNA clone HM05J16 5-PRIME, mRNA sequence.    42   0.005  2
BW243685|BW243685.1 Ciona intestinalis cDNA, clone:citb062f11, 5' end, single read.    38   0.009  4
DW268150|DW268150.1 UI-S-GN1-acb-g-15-0-UI.s1 UI-S-GN1 Euprymna scolopes cDNA clone UI-S-GN1-acb-g-15-0-UI 3', mRNA sequence.    44   0.013  2
CT583715|CT583715.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-143O17.    52   0.039  1
CR001086|CR001086.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN80h14.    52   0.039  1
BX537341|BX537341.5 Zebrafish DNA sequence from clone CH211-103C12 in linkage group 9.    52   0.039  1
AC131726|AC131726.3 Mus musculus chromosome 3 clone RP23-132P9, complete sequence.    52   0.039  1
BX004799|BX004799.9 Zebrafish DNA sequence from clone CH211-176M18 in linkage group 9.    52   0.039  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44   0.049  9
dna update 2006. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_21(AC114263|pid:none) Dictyostelium discoideum chromoso...    66   3e-09
(Q5UP13) RecName: Full=Putative ankyrin repeat protein R846;  &A...    43   0.025
(Q5URB9) RecName: Full=Putative ankyrin repeat protein R840;  &A...    43   0.025
(Q5UPB6) RecName: Full=Putative ankyrin repeat protein L45;  &AY...    41   0.095
(Q5UP39) RecName: Full=Putative ankyrin repeat protein R873;  &A...    41   0.12
(Q5UQZ7) RecName: Full=Putative ankyrin repeat protein R901;  &A...    40   0.21
(Q5UR87) RecName: Full=Putative ankyrin repeat protein R634;  &A...    40   0.21
(Q5UP49) RecName: Full=Putative ankyrin repeat protein L589;  &A...    40   0.28
(Q5UP12) RecName: Full=Putative ankyrin repeat protein R847; Fla...    40   0.28
(Q5UPH0) RecName: Full=Putative ankyrin repeat protein L100;  &A...    40   0.28
protein update 2009. 5.30
PSORT 

 psg: 0.66  gvh: 0.44  alm: 0.25  top: 0.70  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHL254 is nuc
5' end seq. ID SHL254F
5' end seq. 
>SHL254F.Seq
TTGTGAAGGTGGTTATTATAAAATTTTAAAAACTCTACATTCATGGGAGAATTCATTAAG
TTGGGGTAATTGGTTAGTAACAACGAATGCGATGGATAAAGCAGCCGAAAAAGGTCATCT
CAATATCGTCAAATTCTTAATGAACAACAGAAATGAGGGTTGCACTGAAAATGCAATAAT
CAATGCCTCAAAGAATGGTCATTACGATGTTGTAGTTTATTTAGCACATAAAAATAAACC
AATATCTCCACAAGCTTTAGATTTAGCTTCAACATTTGGTTTTATTAAAATCTTATCTTT
TCTTTTCTTTTTCTTAGTTAAAATCATTCACTACAATGATAATATACAACCAAAAAGATT
CTCAATTGAGGACATTCCAACTTTAAAATCAAAATCAAAATCAAAGAAAAAGAAAAAATC
AACATCTTCATCAACTTCTACAACAACACCAATAACAACAATACCATTAATTAATAATTC
ACAATTAATAACTATTGTTACATTAACACAACAACAAACTAATCCAATAATTGTACCATC
ATTAAGAGAACCAAATGTTATTAAAACATGGATGGAAACTTTAGGAATGTGTAANNNNNN
NNNN
Length of 5' end seq. 604
3' end seq. ID SHL254Z
3' end seq. 
>SHL254Z.Seq
NNNNNNNNNNACCNCCTTCNTCCAGTTCAAGTANCGGAACCCAATTTCCAAATGAANNGG
TTTCATTTTANNCTTNTATTGGAAACCCNATTTTGNNATGATTTTAGGCGCATTNGGATA
AGNATTATANTTTAGNGATTTTATCNAATATTAAAGTAGTTAGTGATCATAGTGAGTCAT
TCATTGANGCCATATATTAGTNTANATTGTAAAGGTTATGATTAGATTAANNAGAAATTG
TTTATCACAAGATTTATGATGGTGGTANTGGTTCATGGGCAAATAAACCATTGTCATCTA
GTGGTTCGNGCNTCACAAGTNTGGTGGTGCTTCTNTAGCTGCCTCCAGTGCNTGNAATGT
AGTGGTAAAGAATGTCNAATTCAGAGATTATTAGTGGTNTTTGTAAAACGTTATGGATTC
TTAAAAANTATATCAACATAATTAAGATTCAGATCAAAGNAATGCTTTCATTCAATCTTT
ATTAGTTTNAATTNNACGTAGTAANGATGTTGANNTNNTATTTGAANTNATNAAGGNNGT
TGATTAGGAATTTCAATTTCACCATCACCATCACCTTATNCANCTGCCAGTAGTCANAGA
AACATCTATTCCATCCACNACANCAACANCNNNTNCAGCAGCAGCAACATCAACAAGTTA
CTACTCCATATACAACNNNTACAGCAGCAACANCANCCACTGCTCCAACTACGGCAGAGT
CAACAACAACACCAGTATCATCGACAACAACAACCGAACAATCATCAGATTCATCATCAT
TACCACCACCTCCTCCAGTTCAAGTAACAAAACCAATTCCAAATGAAATGGTTTCATTTT
ATACTTTTATTGGAACCCAATTTGAAAGATTTTAGGCGCATTCGATAAGAATTATAA
Length of 3' end seq. 897
Connected seq. ID SHL254P
Connected seq. 
>SHL254P.Seq
TTGTGAAGGTGGTTATTATAAAATTTTAAAAACTCTACATTCATGGGAGAATTCATTAAG
TTGGGGTAATTGGTTAGTAACAACGAATGCGATGGATAAAGCAGCCGAAAAAGGTCATCT
CAATATCGTCAAATTCTTAATGAACAACAGAAATGAGGGTTGCACTGAAAATGCAATAAT
CAATGCCTCAAAGAATGGTCATTACGATGTTGTAGTTTATTTAGCACATAAAAATAAACC
AATATCTCCACAAGCTTTAGATTTAGCTTCAACATTTGGTTTTATTAAAATCTTATCTTT
TCTTTTCTTTTTCTTAGTTAAAATCATTCACTACAATGATAATATACAACCAAAAAGATT
CTCAATTGAGGACATTCCAACTTTAAAATCAAAATCAAAATCAAAGAAAAAGAAAAAATC
AACATCTTCATCAACTTCTACAACAACACCAATAACAACAATACCATTAATTAATAATTC
ACAATTAATAACTATTGTTACATTAACACAACAACAAACTAATCCAATAATTGTACCATC
ATTAAGAGAACCAAATGTTATTAAAACATGGATGGAAACTTTAGGAATGTGTAA------
----ACCNCCTTCNTCCAGTTCAAGTANCGGAACCCAATTTCCAAATGAANNGGTTTCAT
TTTANNCTTNTATTGGAAACCCNATTTTGNNATGATTTTAGGCGCATTNGGATAAGNATT
ATANTTTAGNGATTTTATCNAATATTAAAGTAGTTAGTGATCATAGTGAGTCATTCATTG
ANGCCATATATTAGTNTANATTGTAAAGGTTATGATTAGATTAANNAGAAATTGTTTATC
ACAAGATTTATGATGGTGGTANTGGTTCATGGGCAAATAAACCATTGTCATCTAGTGGTT
CGNGCNTCACAAGTNTGGTGGTGCTTCTNTAGCTGCCTCCAGTGCNTGNAATGTAGTGGT
AAAGAATGTCNAATTCAGAGATTATTAGTGGTNTTTGTAAAACGTTATGGATTCTTAAAA
ANTATATCAACATAATTAAGATTCAGATCAAAGNAATGCTTTCATTCAATCTTTATTAGT
TTNAATTNNACGTAGTAANGATGTTGANNTNNTATTTGAANTNATNAAGGNNGTTGATTA
GGAATTTCAATTTCACCATCACCATCACCTTATNCANCTGCCAGTAGTCANAGAAACATC
TATTCCATCCACNACANCAACANCNNNTNCAGCAGCAGCAACATCAACAAGTTACTACTC
CATATACAACNNNTACAGCAGCAACANCANCCACTGCTCCAACTACGGCAGAGTCAACAA
CAACACCAGTATCATCGACAACAACAACCGAACAATCATCAGATTCATCATCATTACCAC
CACCTCCTCCAGTTCAAGTAACAAAACCAATTCCAAATGAAATGGTTTCATTTTATACTT
TTATTGGAACCCAATTTGAAAGATTTTAGGCGCATTCGATAAGAATTATAA
Length of connected seq. 1481
Full length Seq ID -
Full length Seq. -
Length of full length seq. -