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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL252
Library SH
(Link to library)
Clone ID SHL252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10968-1
Original site URL
Representative seq. ID SHL252P
(Link to Original site)
Representative DNA sequence 
>SHL252 (SHL252Q) /CSM/SH/SHL2-C/SHL252Q.Seq.d/
AAAAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAAT
AATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTT
TTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAAATAAAAAAAATAAAAAAAAAT
AAAAAAAAATGAATATTAATATAAAGAAATTAGATGGTACAATTTATAGTATTGAAGGNG
TAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTT
CAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGC
AATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCAGAAAGAGCACCAGAAGCAA
ATCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTA
XXXXXXXXXXTCACCAGATTCAGAGGATTACAATATTCANCAAGAGATGAGTAGTTTTAG
CAATCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAAAGA
TGGTGCACTTGAATTTNTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCCAAT
GCTTGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGTTTATGAATCCTCTCC
ACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACAACA
AAATAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACCTTC
AAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGATGA
AGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAAAAA
GAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
kifisklflyyt*f**********isyyyiylplfiiiifi*iiknys*skknkknkkk*
KKMNINIKKLDGTIYSIEGVTLXTTVPELKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQ
FYNIEDGVTLHLAERAPEANPSQSNSGSSGSGSSSTDSI---

---SPDSEDYNIXQEMSSFSNQFVRELVDSLATCFSNGKDGALEFXDSFVNQKVITQSPM
LAPFSRMTSEYLRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPS
RSTSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
kkfsfpnyfyiihnfnnnnnnnnnk*viiiyiypyllllflfk**kiihkvkkikkikkn
kkk*ili*rn*mvqfivlkx*lxkllyqnlkn*lkpnlqfqshfke*fikekyyvmiklc
nfiilkmelhyi*qkehqkqihhnqivevvvvavvvlivl---

---SPDSEDYNIXQEMSSFSNQFVRELVDSLATCFSNGKDGALEFXDSFVNQKVITQSPM
LAPFSRMTSEYLRDVYESSPPLDSLPLINVSLPEQQQQQQNNNNRNTTTTTTTTTTTTPS
RSTSSNIIPPEWMETIEIDEARQSSGTSRTPSATYFKGKKKPTTNNSNNNNNNNNN

Frame B:
knfhfqiifilyiiliiiiiiiiinklllyiftpiyyyyfylnnkklfik*kk*kk*kki
kkney*ykeirwynl*y*rxnfxnyctrt*kin*sqifnfnptsksnl*rksit***nfa
il*y*rwsyitfsrkstrsksitik*wk*w*wq**y**y---

---hqiqritifxkr*vvlainslesw*ilwqlafqmvkmvhlnx*ihl*ikkl*hkvqc
lhhsle*qvnifvmfmnplhhlihyh*lmlvylnnnnnnkiitieillqqqlppqqlhlq
dlhhrilfhqngwkqsklmkqdnhlehqehqvqlilkekrnlpqiiviiiiitti

Frame C:
kifisklflyyt*f**********isyyyiylplfiiiifi*iiknys*skknkknkkk*
KKMNINIKKLDGTIYSIEGVTLXTTVPELKKLIEAKSSISIPLQRVIYKGKVLRDDKTLQ
FYNIEDGVTLHLAERAPEANPSQSNSGSSGSGSSSTDSI---

---trfrglqysxrde*f*qsir*rvgrffgnllfkw*rwct*ixrficksksyntksna
ctil*ndk*iss*cl*ilstt*fitin*c*ft*ttttttk**q*kyyynnnyhhnnytfk
iyiieyystrmdgnnrn**sktiiwnikntkcnlf*rkketyhk********qq*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL252 (SHL252Q) /CSM/SH/SHL2-C/SHL252Q.Seq.d/                       1051   0.0
VHI650 (VHI650Q) /CSM/VH/VHI6-C/VHI650Q.Seq.d/                        565   e-160
VHI166 (VHI166Q) /CSM/VH/VHI1-C/VHI166Q.Seq.d/                        565   e-160
VHB663 (VHB663Q) /CSM/VH/VHB6-C/VHB663Q.Seq.d/                        565   e-160
SHG671 (SHG671Q) /CSM/SH/SHG6-C/SHG671Q.Seq.d/                        565   e-160
SHF507 (SHF507Q) /CSM/SH/SHF5-A/SHF507Q.Seq.d/                        565   e-160
SHD795 (SHD795Q) /CSM/SH/SHD7-D/SHD795Q.Seq.d/                        565   e-160
CHE701 (CHE701Q) /CSM/CH/CHE7-A/CHE701Q.Seq.d/                        565   e-160
AHQ293 (AHQ293Q) /CSM/AH/AHQ2-D/AHQ293Q.Seq.d/                        565   e-160
AHN458 (AHN458Q) /CSM/AH/AHN4-C/AHN458Q.Seq.d/                        565   e-160
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC184369|AC184369.1 Strongylocentrotus purpuratus clone R3-1011G16, WORKING DRAFT SEQUENCE, 26 unordered pieces.    52   0.026  1
AC149991|AC149991.2 Strongylocentrotus purpuratus clone R3-60A2, WORKING DRAFT SEQUENCE, 13 unordered pieces.    50   0.10   1
AC184517|AC184517.1 Strongylocentrotus purpuratus clone R3-3A13, WORKING DRAFT SEQUENCE, 25 unordered pieces.    50   0.10   1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    50   0.10   1
AC176291|AC176291.1 Strongylocentrotus purpuratus clone R3-3057J7, WORKING DRAFT SEQUENCE, 27 unordered pieces.    34   0.23   2
AC093771|AC093771.3 Homo sapiens BAC clone RP11-121I23 from 4, complete sequence.    42   0.26   7
EC319940|EC319940.1 EMBRYOF088886F18 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061024556760, mRNA sequence.    38   0.30   2
BX248586|BX248586.1 Blochmannia floridanus complete genome; segment 3/3.    48   0.31   5
AC005303|AC005303.1 Homo sapiens chromosome 17, clone hRPK.488_L_1, complete sequence.    44   0.38   3
DT731723|DT731723.1 EST1165573 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T943, mRNA sequence.    48   0.41   1
dna update 2006. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC152347_1(AC152347|pid:none) Medicago truncatula clone mth2-28c...    55   5e-06
AC138131_5(AC138131|pid:none) Medicago truncatula clone mth2-21h...    55   5e-06
BX510301_2(BX510301|pid:none) Zebrafish DNA sequence from clone ...    54   8e-06
AM270178_48(AM270178|pid:none) Aspergillus niger contig An08c023...    53   1e-05
(Q9NIF3) RecName: Full=Ubiquilin; AltName: Full=Suppressor of No...    53   1e-05
EU030444_4(EU030444|pid:none) Ornithorhynchus anatinus pseudoaut...    53   2e-05
(P48510) RecName: Full=Ubiquitin domain-containing protein DSK2;...    52   2e-05
BC052476_1(BC052476|pid:none) Danio rerio HLA-B-associated trans...    52   2e-05
A35098(A35098) MHC class III histocompatibility antigen HLA-B-as...    52   3e-05
AL662801_51(AL662801|pid:none) Human DNA sequence from clone XXb...    52   4e-05
protein update 2009. 5.30
PSORT 

 psg: 0.77  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHL252 is nuc
5' end seq. ID SHL252F
5' end seq. 
>SHL252F.Seq
AAAAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAAT
AATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTT
TTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAAATAAAAAAAATAAAAAAAAAT
AAAAAAAAATGAATATTAATATAAAGAAATTAGATGGTACAATTTATAGTATTGAAGGNG
TAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTT
CAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGC
AATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCAGAAAGAGCACCAGAAGCAA
ATCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTA
NNNNNNNNNN
Length of 5' end seq. 490
3' end seq. ID SHL252Z
3' end seq. 
>SHL252Z.Seq
NNNNNNNNNNTCACCAGATTCAGAGGATTACAATATTCANCAAGAGATGAGTAGTTTTAG
CAATCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAAAGA
TGGTGCACTTGAATTTNTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCCAAT
GCTTGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGTTTATGAATCCTCTCC
ACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACAACA
AAATAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACCTTC
AAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGATGA
AGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAAAAA
GAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAAC
Length of 3' end seq. 529
Connected seq. ID SHL252P
Connected seq. 
>SHL252P.Seq
AAAAAATTTTCATTTCCAAATTATTTTTATATTATACATAATTTTAATAATAATAATAAT
AATAATAATAATAAATAAGTTATTATTATATATATTTACCCCTATTTATTATTATTATTT
TTATTTAAATAATAAAAAATTATTCATAAAGTAAAAAAAATAAAAAAAATAAAAAAAAAT
AAAAAAAAATGAATATTAATATAAAGAAATTAGATGGTACAATTTATAGTATTGAAGGNG
TAACTTTANAAACTACTGTACCAGAACTTAAAAAATTAATTGAAGCCAAATCTTCAATTT
CAATCCCACTTCAAAGAGTAATTTATAAAGGAAAAGTATTACGTGATGATAAAACTTTGC
AATTTTATAATATTGAAGATGGAGTTACATTACATTTAGCAGAAAGAGCACCAGAAGCAA
ATCCATCACAATCAAATAGTGGAAGTAGTGGTAGTGGCAGTAGTAGTACTGATAGTATTA
----------TCACCAGATTCAGAGGATTACAATATTCANCAAGAGATGAGTAGTTTTAG
CAATCAATTCGTTAGAGAGTTGGTAGATTCTTTGGCAACTTGCTTTTCAAATGGTAAAGA
TGGTGCACTTGAATTTNTAGATTCATTTGTAAATCAAAAAGTTATAACACAAAGTCCAAT
GCTTGCACCATTCTCTAGAATGACAAGTGAATATCTTCGTGATGTTTATGAATCCTCTCC
ACCACTTGATTCATTACCATTAATTAATGTTAGTTTACCTGAACAACAACAACAACAACA
AAATAATAACAATAGAAATACTACTACAACAACAACTACCACCACAACAACTACACCTTC
AAGATCTACATCATCGAATATTATTCCACCAGAATGGATGGAAACAATCGAAATTGATGA
AGCAAGACAATCATCTGGAACATCAAGAACACCAAGTGCAACTTATTTTAAAGGAAAAAA
GAAACCTACCACAAATAATAGTAATAATAATAATAATAACAACAATAAC
Length of connected seq. 999
Full length Seq ID -
Full length Seq. -
Length of full length seq. -