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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL244
Library SH
(Link to library)
Clone ID SHL244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHL244P
(Link to Original site)
Representative DNA sequence 
>SHL244 (SHL244Q) /CSM/SH/SHL2-B/SHL244Q.Seq.d/
GTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTA
CCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATAT
AACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATT
GTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGA
GATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGAT
ATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTT
TACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGA
AACCTAGATTCTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGT
AACTGGACCATTGATGTAACAATATGTGATGTATTTTATAAAAGTTATCTTTACACATTT
TTACCAATAATCACTGTAATGGAAGGAGTACTTAATGATAATGGTGGTAATTTAACTTTC
ACAXXXXXXXXXXTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACT
ACTCCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAA
ATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTT
CCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTT
GCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGA
TCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACAT
TATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGA
AAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATA
CTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCAC
CAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTC
ATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAA
TAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
VVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTYNYPCTSVYGRIKPLNIANKI
VTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGDIPNKPTIDDQGNITIQGSNL
YNTQIKINSNDPVENLNPTGNLDSTHSTIVFSLPESQYQGNWTIDVTICDVFYKSYLYTF
LPIITVMEGVLNDNGGNLTFT---

---LTCNVTNYDEMLKYNYSQY*iqyqylc*wsilycsnfpi*i*inn*l**k*virisk
*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tlf
iwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnniqf*ikpkpnspi
ynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyflnf
Translated Amino Acid sequence (All Frames) 
Frame A:
VVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGGSVNFTYNYPCTSVYGRIKPLNIANKI
VTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNASYQTGDIPNKPTIDDQGNITIQGSNL
YNTQIKINSNDPVENLNPTGNLDSTHSTIVFSLPESQYQGNWTIDVTICDVFYKSYLYTF
LPIITVMEGVLNDNGGNLTFT---

---fnl*cnql**naki*llpilnsisvsllmvntlllkfsnlnmnqqlvivkishqdfq
mkcisvllql*yf*h*fslllkhrlknilkreepekhldqliiyvlnfvrnmllkslnii
hlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*ypiln*t*tkftn
l*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqiitqlffkf

Frame B:
llifhtridfviipmififyqkshpfhlspq*edplishitilvqvfmve*nl*i*qtkl
*hhtisi*tssp*eynqavei*l*iqaqe*fimlhikleiyqinqqsmtkeilpfkevtf
ttpklkliqmiplktstqlet*illtpp*yfhylnhsikvtgplm*qyvmyfikvifthf
yq*sl*wkeylmimvvi*ls---

---LTCNVTNYDEMLKYNYSQY*iqyqylc*wsilycsnfpi*i*inn*l**k*virisk
*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tlf
iwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnniqf*ikpkpnspi
ynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*llnyflnf

Frame C:
c*fsiqg*tl*lyl*ylfftrnpipsicphnrrir*fhi*lslykclw*nktfeyskqnc
ntiqyqfrpvhhenttrlwrfnykfrlksnl*cfisnwrytk*tnnr*prkyyhsrk*pl
qhpn*n*fk*sr*kpqpnwkprfyslhhsifit*itvsr*ldh*cnnm*cil*klslhif
tnnhcngrst***ww*fnfh---

---*pvm*ptmmkc*nittpntkfnisisvdgqyfiaqifqfkyestisysenkssgfpn
emyigivaiiiflaliffaiktqvekyieerrarkafrsvdnlrlklrekhaaeiakhys
fgyesapkpnksyfydlgkklsrlplirccfkehtd*ilfpnsnpiisnsklnlnqihqs
iik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannysiif*il
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL244 (SHL244Q) /CSM/SH/SHL2-B/SHL244Q.Seq.d/                       2371   0.0
SHJ666 (SHJ666Q) /CSM/SH/SHJ6-C/SHJ666Q.Seq.d/                       1207   0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                       1199   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                       1199   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1199   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1199   0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/                       1199   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1199   0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/                       1199   0.0
SHK166 (SHK166Q) /CSM/SH/SHK1-C/SHK166Q.Seq.d/                       1199   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strainAX4, complete sequence.   129   1e-80  15
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.    52   0.004  2
AC107647|AC107647.4 Mus musculus clone RP23-124C11, LOW-PASS SEQUENCE SAMPLING.    46   0.041  4
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.043  16
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   0.13   12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.18   11
BH550846|BH550846.1 BOGBW76TR BOGB Brassica oleracea genomic clone BOGBW76, DNA sequence.    36   0.23   3
CR548612|CR548612.1 Paramecium tetraurelia macronuclear largest chromosome, complete  sequence.    34   0.36   19
AC068405|AC068405.5 Homo sapiens chromosome 11, clone RP11-71F16, complete sequence.    40   0.50   5
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    32   0.51   13
dna update 2006. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   421   e-116
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   419   e-116
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   419   e-116
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   419   e-116
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   207   4e-55
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   206   7e-55
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   206   7e-55
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   206   7e-55
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   206   7e-55
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   204   4e-54
protein update 2009. 5.30
PSORT 

 psg: 0.64  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHL244 is cyt
5' end seq. ID SHL244F
5' end seq. 
>SHL244F.Seq
GTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTA
CCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATAT
AACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATT
GTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGA
GATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGAT
ATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTT
TACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGA
AACCTAGATTCTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGT
AACTGGACCATTGATGTAACAATATGTGATGTATTTTATAAAAGTTATCTTTACACATTT
TTACCAATAATCACTGTAATGGAAGGAGTACTTAATGATAATGGTGGTAATTTAACTTTC
ACANNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID SHL244Z
3' end seq. 
>SHL244Z.Seq
NNNNNNNNNNTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACTACT
CCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAATT
TTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTCCA
AATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTGCT
ATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGATCA
GTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATTAT
TCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAAAG
AAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATACTA
TTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCACCAA
TCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCATC
TTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAATAA
ATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
Length of 3' end seq. 708
Connected seq. ID SHL244P
Connected seq. 
>SHL244P.Seq
GTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATACCTATGATATTTATTTTTTA
CCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAGGATCCGTTAATTTCACATAT
AACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTTTGAATATAGCAAACAAAATT
GTAACACCATACAATATCAATTTAGACCAGTTCACCATGAGAATACAACCAGGCTGTGGA
GATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATGCTTCATATCAAACTGGAGAT
ATACCAAATAAACCAACAATCGATGACCAAGGAAATATTACCATTCAAGGAAGTAACCTT
TACAACACCCAAATTAAAATTAATTCAAATGATCCCGTTGAAAACCTCAACCCAACTGGA
AACCTAGATTCTACTCACTCCACCATAGTATTTTCATTACCTGAATCACAGTATCAAGGT
AACTGGACCATTGATGTAACAATATGTGATGTATTTTATAAAAGTTATCTTTACACATTT
TTACCAATAATCACTGTAATGGAAGGAGTACTTAATGATAATGGTGGTAATTTAACTTTC
ACA----------TTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACT
ACTCCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAA
ATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTT
CCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTT
GCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGA
TCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACAT
TATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGA
AAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATA
CTATTTCCAAATTCAAATCCAATAATATCCAATTCTAAATTAAACCTAAACCAAATTCAC
CAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTC
ATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAA
TAAATAAATAAAAAAAAAGCAAATAATTACTCAATTATTTTTTAAATTTTA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -