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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL234
Library SH
(Link to library)
Clone ID SHL234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15746-1
Original site URL
Representative seq. ID SHL234P
(Link to Original site)
Representative DNA sequence 
>SHL234 (SHL234Q) /CSM/SH/SHL2-B/SHL234Q.Seq.d/
AAATACAAATCTTGTATTAATAAAACTTTTTATTTCTTTTTTTCTTTTTTCTTTTCTTTT
TTTTTCATTCTCTTATTTATTTTATTTATTTATTATTATTAGAAATATATATATATTAAA
AAAAAAAXXXXXXXXXXAATCCATTATGTAATGCCGATATCTTTGTACCATGCGGTGGTA
GACCAGAATCTGTACAATTGACAAATGTCGATAAAATGTTCACTGCAACCGGTGAATCTC
GTTTCCCAATCATCGTTGAAGGTGCTAATTTATTCTTTACTCAAAAGGCAAGATTAATGA
TCGAAGAGAAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTT
CTTCCTCTTTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGAAGAATTCGATAGACATA
TGTGTGTCAAGGATAATGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATC
ATACCATTGAATCAAATGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAA
CTAAAACTCCACGTTCAATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATG
ATTCAATTCAAACCTCTTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTG
CTGCTTGTCCAAAGGTTTTATTAAATCTTTTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
NTNLVLIKLFISFFLFSFLFFSFSYLFYLFIIIRNIYILKKK---

---NPLCNADIFVPCGGRPESVQLTNVDKMFTATGESRFPIIVEGANLFFTQKARLMIEE
KGAIIFKDASANKGGVTSSSLEVLAALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTI
ESNARLEFECIWSEHESTKTPRSILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAAC
PKVLLNLL
Translated Amino Acid sequence (All Frames) 
Frame A:
kykscinktfyfffsfffsfffillfilfiyyy*kyiyikkk---

---NPLCNADIFVPCGGRPESVQLTNVDKMFTATGESRFPIIVEGANLFFTQKARLMIEE
KGAIIFKDASANKGGVTSSSLEVLAALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTI
ESNARLEFECIWSEHESTKTPRSILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAAC
PKVLLNLL

Frame B:
NTNLVLIKLFISFFLFSFLFFSFSYLFYLFIIIRNIYILKKK---

---ihyvmpislyhavvdqnlyn*qmsikcslqpvnlvsqsslkvliysllkrqd**skr
rvlsslrmplpikvvsllplwrswplwl*mmknsidicvsrim*yqsfmkitlktfiipl
nqmlv*slnvfgvnmnqlklhvqsfpisyqiksihsmiqfkplpfglinhsdvksslllv
qrfy*ify

Frame C:
iqily**nflflfffflffffhsliyfiylllleiyiy*kk---

---sim*crylctmrw*trictidkcr*nvhcnr*isfpnhr*rc*filyskgkindrre
gcyhl*gclcq*rwchfflfgglgrfgfe**rir*tyvcqg*cstrvl*klh*rrssyh*
ikcsfrv*myle*t*in*nstfnpfrslik*nqftq*fnsnlfpld*sitqt*nhlccls
kgfiksf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL234 (SHL234Q) /CSM/SH/SHL2-B/SHL234Q.Seq.d/                       1102   0.0
SHL347 (SHL347Q) /CSM/SH/SHL3-B/SHL347Q.Seq.d/                       1100   0.0
SHG444 (SHG444Q) /CSM/SH/SHG4-B/SHG444Q.Seq.d/                       1100   0.0
SHE719 (SHE719Q) /CSM/SH/SHE7-A/SHE719Q.Seq.d/                       1100   0.0
SHC892 (SHC892Q) /CSM/SH/SHC8-D/SHC892Q.Seq.d/                       1100   0.0
SHC786 (SHC786Q) /CSM/SH/SHC7-D/SHC786Q.Seq.d/                       1100   0.0
SHA610 (SHA610Q) /CSM/SH/SHA6-A/SHA610Q.Seq.d/                       1100   0.0
CHR402 (CHR402Q) /CSM/CH/CHR4-A/CHR402Q.Seq.d/                       1100   0.0
CHR279 (CHR279Q) /CSM/CH/CHR2-D/CHR279Q.Seq.d/                       1100   0.0
AHQ816 (AHQ816Q) /CSM/AH/AHQ8-A/AHQ816Q.Seq.d/                       1100   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DY890611|DY890611.1 CeleSEQ9673 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9673, mRNA sequence.    60   9e-26  4
DY890348|DY890348.1 CeleSEQ9325 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ9325, mRNA sequence.    68   7e-22  3
CZ282233|CZ282233.1 cp21f10.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp21f10, genomic survey sequence.    46   2e-08  2
AL404890|AL404890.1 T3 end of clone AU0AA001B12 of library AU0AA from strain CBS 3082 of Saccharomyces kluyveri.    50   1e-06  2
AC167901|AC167901.2 Bos taurus clone CH240-199M9, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    54   4e-06  2
AQ946351|AQ946351.1 Sheared DNA-44O5.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-44O5, genomic survey sequence.    58   1e-05  2
DY895150|DY895150.1 CeleSEQ14902 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ14902, mRNA sequence.    44   1e-05  2
AZ124420|AZ124420.1 s073r S. servazzii genomic library Saccharomyces servazzii genomic, genomic survey sequence.    40   2e-05  3
DY891745|DY891745.1 CeleSEQ8401 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ8401, mRNA sequence.    44   3e-05  3
Z74263|Z74263.1 S.cerevisiae chromosome IV reading frame ORF YDL215c.    40   4e-05  4
dna update 2006. 7. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DENCED(A92284;A92215;A32204;A00378)glutamate dehydrogenase (EC 1...   194   2e-48
CU633900_481(CU633900|pid:none) Podospora anserina genomic DNA c...   194   3e-48
AP007154_641(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   194   3e-48
AY223544_1(AY223544|pid:none) Emericella nidulans NAD dependent ...   193   3e-48
AM270040_65(AM270040|pid:none) Aspergillus niger contig An02c046...   186   6e-46
AJ310444_1(AJ310444|pid:none) Gibberella fujikuroi gdh1 gene for...   178   2e-43
CR940353_806(CR940353|pid:none) Theileria annulata strain Ankara...   169   5e-41
AE017344_16(AE017344|pid:none) Cryptococcus neoformans var. neof...   168   1e-40
FM992689_715(FM992689|pid:none) Candida dubliniensis CD36 chromo...   154   3e-36
M23436_1(M23436|pid:none) N.crassa NAD-specific glutamate dehyro...   151   2e-35
protein update 2009. 5.30
PSORT 

 psg: 1.01  gvh: 0.63  alm: 0.20  top: 0.67  tms: 0.07  mit: 0.38  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHL234 is nuc
5' end seq. ID SHL234F
5' end seq. 
>SHL234F.Seq
AAATACAAATCTTGTATTAATAAAACTTTTTATTTCTTTTTTTCTTTTTTCTTTTCTTTT
TTTTTCATTCTCTTATTTATTTTATTTATTTATTATTATTAGAAATATATATATATTAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 137
3' end seq. ID SHL234Z
3' end seq. 
>SHL234Z.Seq
NNNNNNNNNNAATCCATTATGTAATGCCGATATCTTTGTACCATGCGGTGGTAGACCAGA
ATCTGTACAATTGACAAATGTCGATAAAATGTTCACTGCAACCGGTGAATCTCGTTTCCC
AATCATCGTTGAAGGTGCTAATTTATTCTTTACTCAAAAGGCAAGATTAATGATCGAAGA
GAAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTTCTTCCTC
TTTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGT
CAAGGATAATGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCAT
TGAATCAAATGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAAC
TCCACGTTCAATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAAT
TCAAACCTCTTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTG
TCCAAAGGTTTTATTAAATCTTTTAT
Length of 3' end seq. 566
Connected seq. ID SHL234P
Connected seq. 
>SHL234P.Seq
AAATACAAATCTTGTATTAATAAAACTTTTTATTTCTTTTTTTCTTTTTTCTTTTCTTTT
TTTTTCATTCTCTTATTTATTTTATTTATTTATTATTATTAGAAATATATATATATTAAA
AAAAAAA----------AATCCATTATGTAATGCCGATATCTTTGTACCATGCGGTGGTA
GACCAGAATCTGTACAATTGACAAATGTCGATAAAATGTTCACTGCAACCGGTGAATCTC
GTTTCCCAATCATCGTTGAAGGTGCTAATTTATTCTTTACTCAAAAGGCAAGATTAATGA
TCGAAGAGAAGGGTGCTATCATCTTTAAGGATGCCTCTGCCAATAAAGGTGGTGTCACTT
CTTCCTCTTTGGAGGTCTTGGCCGCTTTGGCTTTGAATGATGAAGAATTCGATAGACATA
TGTGTGTCAAGGATAATGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATC
ATACCATTGAATCAAATGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAA
CTAAAACTCCACGTTCAATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATG
ATTCAATTCAAACCTCTTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTG
CTGCTTGTCCAAAGGTTTTATTAAATCTTTTAT
Length of connected seq. 683
Full length Seq ID -
Full length Seq. -
Length of full length seq. -