SHL207
Library SH
(Link to library)
Clone ID SHL207
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11097-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHL207 (SHL207Q) /CSM/SH/SHL2-A/SHL207Q.Seq.d/
XXXXXXXXXXATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTGTCGGACATAAATGG
GCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATTGTAAATATGGTTAC
TCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAAAATCACCCGATGAT
ACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCACATCGTGGTTCACTT
CAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACTTTTATATCAGTGAA
ACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTATCTCAACAAATAAA
GAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCTCTTTTGTTGTGCGT
GTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTTCAATCCTTCCAATT
CCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATCAATCTTCAAAATCT
TATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAACTTTTAGATTTATT
TCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATAAATTTNA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NTSWDFARFEVVGHKWADLSEYDFGMALLNDCKYGYSTLGGRIGLSLLRSPKSPDDT
CDMGSHKFTYSIYPHRGSLQSASVIKEGYSLNNNFYISETPFSLASTTHIDKTFISTNKE
AIIVDTIKKAEDGTSFVVRVYESFGGATTFNFTSSILPIPFKSIIECNGLEEVNQSSKSY
KFNDTIKINPFEIKTFRFISN*klkiklinkyknkf


Translated Amino Acid sequence (All Frames)
Frame A:
---*hklgfrki*scrt*mgrs**i*fwygiierl*iwllnirwsywfiitkitkitr*y
l*ygfs*ihllnlstswftsiclrh*rrlfik**llyq*ntilfsfynsyr*nfylnk*r
shhc*yn*ks*rwhlfccacl*ifwwchyf*lyifnpsnsiqinh*m*ws*rs*sifkil
*i**yn*n*si*nqnf*iyfklkiknkink*i*k*ix


Frame B:
---NTSWDFARFEVVGHKWADLSEYDFGMALLNDCKYGYSTLGGRIGLSLLRSPKSPDDT
CDMGSHKFTYSIYPHRGSLQSASVIKEGYSLNNNFYISETPFSLASTTHIDKTFISTNKE
AIIVDTIKKAEDGTSFVVRVYESFGGATTFNFTSSILPIPFKSIIECNGLEEVNQSSKSY
KFNDTIKINPFEIKTFRFISN*klkiklinkyknkf


Frame C:
---tqvgisqdlklsdingpilvnmilvwhy*tivnmvtqh*vvvlvyhy*dhqnhpmil
viwvlinsptqfihivvhfnlppslkkaih*iitfisvkhhsl*llqlisikllsqqikk
pslliqlkklkmaplllcvfmnllvvpllltlhlqsfqfhsnqslnvmvlkklinlqnli
nlmiqlklihlksklldlfqikn*k*n**inikinx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL207 (SHL207Q) /CSM/SH/SHL2-A/SHL207Q.Seq.d/ 1174 0.0
SHF873 (SHF873Q) /CSM/SH/SHF8-D/SHF873Q.Seq.d/ 1174 0.0
SHF554 (SHF554Q) /CSM/SH/SHF5-C/SHF554Q.Seq.d/ 1174 0.0
SHD731 (SHD731Q) /CSM/SH/SHD7-B/SHD731Q.Seq.d/ 1174 0.0
SHA333 (SHA333Q) /CSM/SH/SHA3-B/SHA333Q.Seq.d/ 1174 0.0
CHQ611 (CHQ611Q) /CSM/CH/CHQ6-A/CHQ611Q.Seq.d/ 1174 0.0
AHR366 (AHR366Q) /CSM/AH/AHR3-C/AHR366Q.Seq.d/ 1174 0.0
AHO450 (AHO450Q) /CSM/AH/AHO4-C/AHO450Q.Seq.d/ 1174 0.0
AHN834 (AHN834Q) /CSM/AH/AHN8-B/AHN834Q.Seq.d/ 1174 0.0
AHL346 (AHL346Q) /CSM/AH/AHL3-B/AHL346Q.Seq.d/ 1174 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 56 0.001 1
CG820724|CG820724.1 SOYEJ16TV LargeInsertSoybeanGenLib Glycine max genomic clone H62P17:MTP17C8, genomic survey sequence. 40 0.54 2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 34 0.78 5
EB360804|EB360804.1 ki02h09.w1 Human fetal lens. (ki) Homo sapiens cDNA clone ki02h09, mRNA sequence. 46 1.0 1
CR293508|CR293508.9 Zebrafish DNA sequence from clone CH211-13K20 in linkage group 15. 46 1.0 1
AL139186|AL139186.16 Human DNA sequence from clone RP11-76N11 on chromosome 13 Contains the 5' end of the DACH gene (Dachshund (Drosophila) homolog), a 60S ribosomal protein L35A pseudogene, a CpG island, ESTs, STSs and GSSs. 46 1.0 1
AL713717|AL713717.1 Homo sapiens mRNA; cDNA DKFZp667G1416 (from clone DKFZp667G1416). 46 1.0 1
AC068490|AC068490.4 Homo sapiens BAC clone RP11-789K7 from 2, complete sequence. 32 2.0 2
AP006131|AP006131.1 Lotus japonicus genomic DNA, chromosome 4, clone:LjT28E04, TM0229. 32 2.1 2
AP007836|AP007836.1 Lotus japonicus genomic DNA, chromosome 4, clone:LjB13B18, BM1138. 32 2.1 2
dna update 2006. 7. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K67) RecName: Full=Alpha-mannosidase G; EC=3.2.1.24; 376 e-103
AE017262_2020(AE017262|pid:none) Listeria monocytogenes str. 4b ... 145 1e-33
AG1326(AG1326) alpha-mannosidase homolog lmo2015 [imported] - Li... 143 5e-33
AM263198_2035(AM263198|pid:none) Listeria welshimeri serovar 6b ... 141 2e-32
CP001098_1428(CP001098|pid:none) Halothermothrix orenii H 168, c... 137 3e-31
AI1697(AI1697) alpha-mannosidase homolog lin2123 [imported] - Li... 135 1e-30
CP000312_2007(CP000312|pid:none) Clostridium perfringens SM101, ... 134 2e-30
(Q9UT61) RecName: Full=Alpha-mannosidase; EC=3.2.1.24; ... 132 9e-30
(Q9NTJ4) RecName: Full=Alpha-mannosidase 2C1; EC=3.2.1.... 131 2e-29
CP000924_603(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 130 2e-29
protein update 2009. 5.30
PSORT

psg: 0.75 gvh: 0.34 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for SHL207 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHL207Z
3' end seq.
>SHL207Z.Seq
NNNNNNNNNNATAACACAAGTTGGGATTTCGCAAGATTTGAAGTTGTCGGACATAAATGG
GCCGATCTTAGTGAATATGATTTTGGTATGGCATTATTGAACGATTGTAAATATGGTTAC
TCAACATTAGGTGGTCGTATTGGTTTATCATTACTAAGATCACCAAAATCACCCGATGAT
ACTTGTGATATGGGTTCTCATAAATTCACCTACTCAATTTATCCACATCGTGGTTCACTT
CAATCTGCCTCCGTCATTAAAGAAGGCTATTCATTAAATAATAACTTTTATATCAGTGAA
ACACCATTCTCTTTAGCTTCTACAACTCATATCGATAAAACTTTTATCTCAACAAATAAA
GAAGCCATCATTGTTGATACAATTAAAAAAGCTGAAGATGGCACCTCTTTTGTTGTGCGT
GTTTATGAATCTTTTGGTGGTGCCACTACTTTTAACTTTACATCTTCAATCCTTCCAATT
CCATTCAAATCAATCATTGAATGTAATGGTCTTGAAGAAGTTAATCAATCTTCAAAATCT
TATAAATTTAATGATACAATTAAAATTAATCCATTTGAAATCAAAACTTTTAGATTTATT
TCAAATTAAAAATTAAAAATAAAATTAATAAATAAATATAAAAATAAATTTNA
Length of 3' end seq. 653
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -