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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL203
Library SH
(Link to library)
Clone ID SHL203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16345-1
Original site URL
Representative seq. ID SHL203P
(Link to Original site)
Representative DNA sequence 
>SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/
CAATCTTTGCCGCTCCAATTGCAATTGCAAGCAATGCTGAAATTAAATTAACCAGTGGTA
ACCATGTATTCAATGGTGTAAATGGTGCAACCAACTCCATCATGACCATCGTAAATGGTG
CAGTCTCATTAAATGCCCCAAGTACCTGTCACACTGTTGACCTCACTGGTGCTGGTTCAA
TCTTAGTTAACTCCAACTCTGTCATCAACACAATTAAAGCCGCAGCAACTGCTCAAGTTA
ACGTTGCCAAAGCTGGTCTCCTCAACATTAATGGTATTGCTGATATTAAAGCCATCCTCA
ACTTAAAAGATACTGCCAACGTTGTCGTCGCTGCCAAAGCCACTGCTAACCTCTTAGGTG
GTGTTAATGCTATTGCTCAATCACAAATTCAAGCTATGGATAGCTCTATCCTCAACATGG
GTAAAACCTGTACTCTCTCACAACCAATCATCATGGGTAAACAAGCTGTTATXXXXXXXX
XXGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGC
TCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGG
TAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAAT
CACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGAC
CACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGAT
CGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAA
TCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGG
TAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCT
sequence update 2002.10.25
Translated Amino Acid sequence 
IFAAPIAIASNAEIKLTSGNHVFNGVNGATNSIMTIVNGAVSLNAPSTCHTVDLTGAGSI
LVNSNSVINTIKAAATAQVNVAKAGLLNINGIADIKAILNLKDTANVVVAAKATANLLGG
VNAIAQSQIQAMDSSILNMGKTCTLSQPIIMGKQAV---

---SIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALM
SITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASE
ANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQA
Translated Amino Acid sequence (All Frames) 
Frame A:
qslplqlqlqamlkln*pvvtmysmv*mvqptps*ps*mvqsh*mpqvpvtlltslvlvq
s*ltptlsstqlkpqqllkltlpklvsstlmvllilkpsst*kilptlsslpkpllts*v
vlmlllnhkfklwialsstwvkpvlshnqsswvnkll---

---vqlnqkllislmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*
cqsppqpkpqslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpq
kpiklklplvlysnssqpqllkvmspqlavspqalllllnk

Frame B:
nlcrsncnckqc*n*inqw*pciqwckwcnqlhhdhrkwcslikcpkylshc*phwcwfn
ls*lqlchqhn*srsncss*rcqswspqh*wyc*y*shpqlkrycqrcrrcqshc*plrw
c*cycsitnssyg*lypqhg*nlyslttnhhg*tscy---

---fn*iksy*fhswyhsrcwcs*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cfn
vnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclr
sqss*nclwyciqihlspsc*r*clls*lshlkhccccsts

Frame C:
IFAAPIAIASNAEIKLTSGNHVFNGVNGATNSIMTIVNGAVSLNAPSTCHTVDLTGAGSI
LVNSNSVINTIKAAATAQVNVAKAGLLNINGIADIKAILNLKDTANVVVAAKATANLLGG
VNAIAQSQIQAMDSSILNMGKTCTLSQPIIMGKQAV---

---SIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDALM
SITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASE
ANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQA
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/                       1840   0.0
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        944   0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        944   0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        944   0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/                        944   0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/                        944   0.0
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/                        944   0.0
SHG713 (SHG713Q) /CSM/SH/SHG7-A/SHG713Q.Seq.d/                        944   0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/                        944   0.0
SHG390 (SHG390Q) /CSM/SH/SHG3-D/SHG390Q.Seq.d/                        944   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   944   0.0    2
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.098  1
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.39   1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.39   1
AC110319|AC110319.5 Rattus norvegicus clone CH230-234D19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48   0.39   1
AL393003|AL393003.1 T7 end of clone AR0AA008B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.39   1
AC164878|AC164878.2 Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence.    48   0.39   1
AC022143|AC022143.7 Homo sapiens chromosome 19 clone CTD-2378H7, complete sequence.    48   0.39   1
AC008747|AC008747.5 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence.    48   0.39   1
DY882957|DY882957.1 AresSEQ12202 Amorphotheca resinae pBluescript (EcoRI-XhoI) Amorphotheca resinae cDNA clone AresSEQ12202, mRNA sequence.    46   1.5    1
dna update 2006. 7. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   212   2e-53
CP000325_1000(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    35   4.8
CP000854_535(CP000854|pid:none) Mycobacterium marinum M, complet...    35   4.8
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   8.1
protein update 2009. 1.18
PSORT 

 psg: 0.94  gvh: 0.50  alm: 0.41  top: 0.50  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHL203 is cyt
5' end seq. ID SHL203F
5' end seq. 
>SHL203F.Seq
CAATCTTTGCCGCTCCAATTGCAATTGCAAGCAATGCTGAAATTAAATTAACCAGTGGTA
ACCATGTATTCAATGGTGTAAATGGTGCAACCAACTCCATCATGACCATCGTAAATGGTG
CAGTCTCATTAAATGCCCCAAGTACCTGTCACACTGTTGACCTCACTGGTGCTGGTTCAA
TCTTAGTTAACTCCAACTCTGTCATCAACACAATTAAAGCCGCAGCAACTGCTCAAGTTA
ACGTTGCCAAAGCTGGTCTCCTCAACATTAATGGTATTGCTGATATTAAAGCCATCCTCA
ACTTAAAAGATACTGCCAACGTTGTCGTCGCTGCCAAAGCCACTGCTAACCTCTTAGGTG
GTGTTAATGCTATTGCTCAATCACAAATTCAAGCTATGGATAGCTCTATCCTCAACATGG
GTAAAACCTGTACTCTCTCACAACCAATCATCATGGGTAAACAAGCTGTTATNNNNNNNN
NN
Length of 5' end seq. 482
3' end seq. ID SHL203Z
3' end seq. 
>SHL203Z.Seq
NNNNNNNNNNGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGT
GTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAAC
ATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTA
ATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAAC
GGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTT
CCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCA
GAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTT
GTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAA
CAAGCT
Length of 3' end seq. 486
Connected seq. ID SHL203P
Connected seq. 
>SHL203P.Seq
CAATCTTTGCCGCTCCAATTGCAATTGCAAGCAATGCTGAAATTAAATTAACCAGTGGTA
ACCATGTATTCAATGGTGTAAATGGTGCAACCAACTCCATCATGACCATCGTAAATGGTG
CAGTCTCATTAAATGCCCCAAGTACCTGTCACACTGTTGACCTCACTGGTGCTGGTTCAA
TCTTAGTTAACTCCAACTCTGTCATCAACACAATTAAAGCCGCAGCAACTGCTCAAGTTA
ACGTTGCCAAAGCTGGTCTCCTCAACATTAATGGTATTGCTGATATTAAAGCCATCCTCA
ACTTAAAAGATACTGCCAACGTTGTCGTCGCTGCCAAAGCCACTGCTAACCTCTTAGGTG
GTGTTAATGCTATTGCTCAATCACAAATTCAAGCTATGGATAGCTCTATCCTCAACATGG
GTAAAACCTGTACTCTCTCACAACCAATCATCATGGGTAAACAAGCTGTTAT--------
--GTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGTGTTGGTGC
TCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAACATTGTTGG
TAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTAATGTCAAT
CACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAACGGTAAGAC
CACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGAT
CGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAA
TCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGG
TAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCT
Length of connected seq. 948
Full length Seq ID -
Full length Seq. -
Length of full length seq. -