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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFJ756
Library AF
(Link to library)
Clone ID AFJ756
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15568-1
Original site URL
Representative seq. ID AFJ756P
(Link to Original site)
Representative DNA sequence 
>AFJ756 (AFJ756Q) /CSM/AF/AFJ7-C/AFJ756Q.Seq.d/
CACTGTTGGCCTACTGGTGGACAACAACAAGCAGCTCAAGTTTTAGTACAACAACAACAA
TCAAAAGAACAACAACAAAAAGAACAGCAAATGAGGGCACAACAACAGCAACAACAGCAA
CAACAACAGGCAATTCAACAACAGCAATTAAAAGAACAGCAATTAAGAGAACAGCAGCAA
CAACAGCAACAACAACAATTAAGAGAACAGCAATTAAGAGAACAACAATTAAGAGAGCAA
CAATTTAGGGAGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATCGTCACAAT
TATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAACCTTTACAA
CCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTACAAGCTGCA
CAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAACANCAACAA
CAACAACAXXXXXXXXXXACAACTATTTCNACAACAACAACAACNTCNTCAGGGCAACAA
CACCAACACAATCCAATGCAACAACCNCAAATTCACCAACNAATTCAACAACAATTCCAA
CAACATCAACATCATCATCAGCTCCAACAACCACCGCAACCAACNAATCAGCAGCAGCTT
TATTAGTCNCCTGATAAAAAGAAAAAAGAAGAAGAAGATAAANAANAANAANACAAAGAA
AGCAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HCWPTGGQQQAAQVLVQQQQSKEQQQKEQQMRAQQQQQQQQQQAIQQQQLKEQQLREQQQ
QQQQQQLREQQLREQQLREQQFREQQFREQQQFQQQNRHNYQNEQDNSQQQQQQQYQPLQ
PPPVIPQNYQQPSLQTLQAAQAIQSMQSMHQQQQQQQXQQQQ---

---QLFXQQQQXXQGNNTNTIQCNNXKFTNXFNNNSNNINIIISSNNHRNQXISSSFISX
LIKRKKKKKIXXXXTKKA
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGGQQQAAQVLVQQQQSKEQQQKEQQMRAQQQQQQQQQQAIQQQQLKEQQLREQQQ
QQQQQQLREQQLREQQLREQQFREQQFREQQQFQQQNRHNYQNEQDNSQQQQQQQYQPLQ
PPPVIPQNYQQPSLQTLQAAQAIQSMQSMHQQQQQQQXQQQQ---

---ttistttttssgqqhqhnpmqqpqihqxiqqqfqqhqhhhqlqqppqptnqqqly*s
pdkkkkeeedkxxxxkesk

Frame B:
tvgllvdnnkqlkf*ynnnnqknnnkknsk*ghnnsnnsnnnrqfnnsn*knsn*enssn
nsnnnn*ensn*ennn*esnnlgsnnlgnnnnfnnkivtiikmnkiirnnnnnnninlyn
hhqsypktinnhhfklyklhklfnrcnqctnnnnnnnxnnnn---

---QLFXQQQQXXQGNNTNTIQCNNXKFTNXFNNNSNNINIIISSNNHRNQXISSSFISX
LIKRKKKKKIXXXXTKKA

Frame C:
llaywwtttssssfsttttikrtttkrtanegtttattatttgnsttaikrtaikrtaat
tatttikrtaikrttikrati*gati*gtttisttkssqlsk*tr*fattttttistftt
ttshtpklsttitsnstsctsysidainaptttttttxtttt---

---nyfxnnnnxxrattptqsnattxnsptnsttipttstsssaptttatnxsaaallvx
**kekrrrr*xxxxqrkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFC816 (SFC816Q) /CSM/SF/SFC8-A/SFC816Q.Seq.d/                        208   9e-53
AFO308 (AFO308Q) /CSM/AF/AFO3-A/AFO308Q.Seq.d/                        208   9e-53
AFJ756 (AFJ756Q) /CSM/AF/AFJ7-C/AFJ756Q.Seq.d/                        208   9e-53
AFE350 (AFE350Q) /CSM/AF/AFE3-C/AFE350Q.Seq.d/                        208   9e-53
VSF828 (VSF828Q) /CSM/VS/VSF8-B/VSF828Q.Seq.d/                        109   6e-23
VSJ615 (VSJ615Q) /CSM/VS/VSJ6-A/VSJ615Q.Seq.d/                         74   3e-12
VSD502 (VSD502Q) /CSM/VS/VSD5-A/VSD502Q.Seq.d/                         74   3e-12
SSH274 (SSH274Q) /CSM/SS/SSH2-D/SSH274Q.Seq.d/                         74   3e-12
AHL593 (AHL593Q) /CSM/AH/AHL5-D/AHL593Q.Seq.d/                         74   3e-12
SFE162 (SFE162Q) /CSM/SF/SFE1-C/SFE162Q.Seq.d/                         54   3e-06
own update 2002. 9.17
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM094322|BM094322.1 saj14a08.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2703 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence.    48  0.16  1
AI973570|AI973570.1 sc88e12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-455 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence.    48  0.16  1
BG046482|BG046482.1 saa54g06.y1 Gm-c1060 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1060-684 5' similar to TR:O04336 O04336 ELICITOR RESPONSE ELEMENT BINDING PROTEIN WRKY3 ISOLOG. ;, mRNA sequence.    48  0.16  1
BD099886|BD099886.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    36  0.19  2
BD019948|BD019948.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    36  0.19  2
S96842|S96842.1 SP96=spore-coat protein {5' region} [Dictyostelium discoideum, prespore cells, Genomic, 2305 nt].    46  0.61  1
BD186839|BD186839.1 Nucleic acids isolated from neuroblastoma.    36  0.63  2
BM731892|BM731892.1 sal86a10.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-2731 5' similar to TR:Q9ZUI7 Q9ZUI7 T2K10.11 PROTEIN. ;, mRNA sequence.    40  1.8  2
BI786112|BI786112.1 sai33a08.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-5007 5' similar to TR:Q9ZUI7 Q9ZUI7 T2K10.11 PROTEIN. ;, mRNA sequence.    40  1.9  2
CD410566|CD410566.1 Gm_ck38578 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    40  2.0  2
dna update 2003. 9. 6
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 163,922,936
protein update 2009. 4.24
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 36.0 %: cytoplasmic

>> prediction for AFJ756 is nuc
5' end seq. ID AFJ756F
5' end seq. 
>AFJ756F.Seq
CACTGTTGGCCTACTGGTGGACAACAACAAGCAGCTCAAGTTTTAGTACAACAACAACAA
TCAAAAGAACAACAACAAAAAGAACAGCAAATGAGGGCACAACAACAGCAACAACAGCAA
CAACAACAGGCAATTCAACAACAGCAATTAAAAGAACAGCAATTAAGAGAACAGCAGCAA
CAACAGCAACAACAACAATTAAGAGAACAGCAATTAAGAGAACAACAATTAAGAGAGCAA
CAATTTAGGGAGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATCGTCACAAT
TATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAACCTTTACAA
CCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTACAAGCTGCA
CAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAACANCAACAA
CAACAACA----------
Length of 5' end seq. 488
3' end seq. ID AFJ756Z
3' end seq. 
>AFJ756Z.Seq
----------ACAACTATTTCNACAACAACAACAACNTCNTCAGGGCAACAACACCAACA
CAATCCAATGCAACAACCNCAAATTCACCAACNAATTCAACAACAATTCCAACAACATCA
ACATCATCATCAGCTCCAACAACCACCGCAACCAACNAATCAGCAGCAGCTTTATTAGTC
NCCTGATAAAAAGAAAAAAGAAGAAGAAGATAAANAANAANAANACAAAGAAAGCAAA
Length of 3' end seq. 228
Connected seq. ID AFJ756P
Connected seq. 
>AFJ756P.Seq
CACTGTTGGCCTACTGGTGGACAACAACAAGCAGCTCAAGTTTTAGTACAACAACAACAA
TCAAAAGAACAACAACAAAAAGAACAGCAAATGAGGGCACAACAACAGCAACAACAGCAA
CAACAACAGGCAATTCAACAACAGCAATTAAAAGAACAGCAATTAAGAGAACAGCAGCAA
CAACAGCAACAACAACAATTAAGAGAACAGCAATTAAGAGAACAACAATTAAGAGAGCAA
CAATTTAGGGAGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATCGTCACAAT
TATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCAACCTTTACAA
CCACCACCAGTCATACCCCAAAACTATCAACAACCATCACTTCAAACTCTACAAGCTGCA
CAAGCTATTCAATCGATGCAATCAATGCACCAACAACAACAACAACAACAACANCAACAA
CAACAACA----------ACAACTATTTCNACAACAACAACAACNTCNTCAGGGCAACAA
CACCAACACAATCCAATGCAACAACCNCAAATTCACCAACNAATTCAACAACAATTCCAA
CAACATCAACATCATCATCAGCTCCAACAACCACCGCAACCAACNAATCAGCAGCAGCTT
TATTAGTCNCCTGATAAAAAGAAAAAAGAAGAAGAAGATAAANAANAANAANACAAAGAA
AGCAAA
Length of connected seq. 716
Full length Seq ID -
Full length Seq. -
Length of full length seq. -