>SHL185 (SHL185Q) /CSM/SH/SHL1-D/SHL185Q.Seq.d/
TTATTGACCCAACAGAAACCATTAGACATTTAATAACATTACCAGGTAATAGTATACAAA
CACCAACCTTTTTATTAGCTTTTACACAAGAGGGTGTTATTTATTTGTGGGATCCAGAAA
CCCATAAACTTCAAACCATTGTACATCAATTAAAATTGGATGATAAAAGACCAATTACAT
GTAAATCTGCTGCACCAAATAAACCTGTTATCTTTTTTTCAAAAAATGAATCTAAAGATA
TTGTTGTTGTTGATTTTCATAATAAAGGATCATCACCATTTAAATTAAAAGGACATAAAA
AACCAATTTCAGCAATTGCACATCATCCAGCAAAAACCATTTTAGCATCATGTAGTACTG
ATGGTCAATTAAAGATTTGGGATACAAGAAATAATACGTCATTTTTAAATTTTGAAGAGT
TTTCATCCTATGAGAATACTAGAAATATTGAACATTCAAATCATTACTTTTTAGTATTTG
AACCAACTGGTAAATATTTAGTAATGACAGGTTCTTCAGGTTTAACTTTAGTTTATGGTG
ATTTAACTTCTCAAAATCCACAAGAAGTAATTGCAAATGGATTTATTTGTAAAGGTCAAA
ATATATTATXXXXXXXXXXCTGTCATCGCAATCAAAAGAGATGCAGAGCTAAGAGGTGAT
GATCATGTTTTACTCGCTGCTTGTGATAAATATTTGAATAAACAAAATAAATCAATCAAT
AAAGTCAATCCACCAGTTGTAAAGATTTTACCATGGGATCCAACAGCCACAACCAATGTT
AGTATGAAATCGGGTTTGGATTATCTCTCCCCAATCAATTTAAATTCAATTCAAAGATAT
TATCCAATCTCTTTACCATTTAGTGGTGCAAGTGCCTCTTTGAATGGTGGAAAACATAAA
CTATTACGTCCTCCTGAAGAAAGCTGGCCACCTGAAGATTTTAAACATTCCGTTGCAATC
ACTCCTCCTCGTACTCTAATGTCTTTGGTTGCCAATCGTTTATCAACTAAATCCCATATG
TCTTCAACTACAACATTACGTCGTTCACCCTCAATTGAAAATATTAGAACTACCTCTACC
ACTTTTGACTCTTCAAAATTCAATACCGATAATCAAGAGCTATTCGATGATGACTCTGAT
GATGACTCTGACTCTGGTGCTGATGCCGATGTCGATAGTGAAAATGAAGAAGATAGAAAA
TTGGTTATGACTGTTCCTGCCTCACTACAGCATAATGATAATTCTTCTCTAACAAATATC
ACCGTAACTGATAATGATTCAAATTTAGATCAAGATATAACCTCAAATACTGGTTCTGAT
ATTGCTGATTTAAATNATACTCAATTATCTTCAACTCCAACTCCAACTACAACCTTATCT
TCTTAAAATTATATAAAAATTA

IDPTETIRHLITLPGNSIQTPTFLLAFTQEGVIYLWDPETHKLQTIVHQLKLDDKRPITC
KSAAPNKPVIFFSKNESKDIVVVDFHNKGSSPFKLKGHKKPISAIAHHPAKTILASCSTD
GQLKIWDTRNNTSFLNFEEFSSYENTRNIEHSNHYFLVFEPTGKYLVMTGSSGLTLVYGD
LTSQNPQEVIANGFICKGQNIL---

---VIAIKRDAELRGDDHVLLAACDKYLNKQNKSINKVNPPVVKILPWDPTATTNVSMKS
GLDYLSPINLNSIQRYYPISLPFSGASASLNGGKHKLLRPPEESWPPEDFKHSVAITPPR
TLMSLVANRLSTKSHMSSTTTLRRSPSIENIRTTSTTFDSSKFNTDNQELFDDDSDDDSD
SGADADVDSENEEDRKLVMTVPASLQHNDNSSLTNITVTDNDSNLDQDITSNTGSDIADL
NXTQLSSTPTPTTTLSS*nyiki

Frame A:
lltqqkpldi**hyqvivykhqpfy*llhkrvlficgiqkpinfkplyin*nwmikdqlh
vnllhqinllsffqkmnlkillllifiikdhhhln*kdiknqfqqlhiiqqkpf*hhvvl
mvn*rfgiqeiirhf*ilksfhpmrileilniqiitf*ylnqlvni***qvlqv*l*fmv
i*llkihkk*lqmdlfvkvkiyy---

---lssqskemqs*evmimfysllvini*inkinqsiksihql*rfyhgiqqpqpmlv*n
rvwiispqsi*iqfkdiiqslyhlvvqvpl*mveninyyvllkkaghlkilniplqslll
vl*clwlpivyqlnpiclqlqhyvvhpqlkilelplplltlqnsipiiksysmmtlmmtl
tlvlmpmsivkmkkienwl*lflphysimiill*qisp*limiqi*iki*pqilvlilli
*xilnylqlqlqlqpyllkii*kl

Frame B:
y*pnrnh*tfnnitr**ytntnlfisfytrgcylfvgsrnp*tsnhctsikig**ktnym
*icctk*tcylffkk*i*ryccc*fs**riiti*ikrt*ktnfsnctsssknhfsim*y*
wsikdlgykk*yvifkf*rvfil*ey*ky*tfksllfsi*tnw*ifsndrffrfnfslw*
fnfskstrsnckwiyl*rskyi---

---chrnqkrcrakr**scftrcl**ife*tk*inq*sqstsckdftmgsnshnqc*yei
gfglslpnqfkfnskilsnlfti*wckclfewwkt*titss*rklat*rf*tfrcnhsss
ysnvfgcqsfin*ipyvfnynitsftln*ky*nylyhf*lfkiqyr*srair**l***l*
lwc*crcr**k*rr*kigydcscltta***ffsnkyhrn***fkfrsrynlkywf*yc*f
kxysiifnsnsnynliflklykn

Frame C:
IDPTETIRHLITLPGNSIQTPTFLLAFTQEGVIYLWDPETHKLQTIVHQLKLDDKRPITC
KSAAPNKPVIFFSKNESKDIVVVDFHNKGSSPFKLKGHKKPISAIAHHPAKTILASCSTD
GQLKIWDTRNNTSFLNFEEFSSYENTRNIEHSNHYFLVFEPTGKYLVMTGSSGLTLVYGD
LTSQNPQEVIANGFICKGQNIL---

---VIAIKRDAELRGDDHVLLAACDKYLNKQNKSINKVNPPVVKILPWDPTATTNVSMKS
GLDYLSPINLNSIQRYYPISLPFSGASASLNGGKHKLLRPPEESWPPEDFKHSVAITPPR
TLMSLVANRLSTKSHMSSTTTLRRSPSIENIRTTSTTFDSSKFNTDNQELFDDDSDDDSD
SGADADVDSENEEDRKLVMTVPASLQHNDNSSLTNITVTDNDSNLDQDITSNTGSDIADL
NXTQLSSTPTPTTTLSS*nyiki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL185 (SHL185Q) /CSM/SH/SHL1-D/SHL185Q.Seq.d/                       2672   0.0
AHD693 (AHD693Q) /CSM/AH/AHD6-D/AHD693Q.Seq.d/                       1516   0.0
AHA289 (AHA289Q) /CSM/AH/AHA2-D/AHA289Q.Seq.d/                       1493   0.0
AHQ260 (AHQ260Q) /CSM/AH/AHQ2-C/AHQ260Q.Seq.d/                       1427   0.0
AHI604 (AHI604Q) /CSM/AH/AHI6-A/AHI604Q.Seq.d/                       1340   0.0
VHC250 (VHC250Q) /CSM/VH/VHC2-C/VHC250Q.Seq.d/                       1314   0.0
CHB894 (CHB894Q) /CSM/CH/CHB8-D/CHB894Q.Seq.d/                       1308   0.0
SHA245 (SHA245Q) /CSM/SH/SHA2-B/SHA245Q.Seq.d/                       1114   0.0
AHO116 (AHO116Q) /CSM/AH/AHO1-A/AHO116Q.Seq.d/                         46   0.001
AHM830 (AHM830Q) /CSM/AH/AHM8-B/AHM830Q.Seq.d/                         46   0.001

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB494437|CB494437.1 omykrbhb006068 Oncorhynchus mykiss Tzenaicut Lake wholeOncorhynchus mykiss cDNA, mRNA sequence.    52   0.037  1
AC181284|AC181284.1 Strongylocentrotus purpuratus clone R3-4016P17, WORKING DRAFT SEQUENCE, 20 unordered pieces.    52   0.037  1
AC180971|AC180971.1 Strongylocentrotus purpuratus clone R3-3059C09, WORKING DRAFT SEQUENCE, 17 unordered pieces.    52   0.037  1
AC178787|AC178787.1 Strongylocentrotus purpuratus clone R3-21K07, WORKING DRAFT SEQUENCE, 23 unordered pieces.    52   0.037  1
AC178192|AC178192.1 Strongylocentrotus purpuratus clone R3-1116K10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    52   0.037  1
CR382131|CR382131.1 Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia  lipolytica.    50   0.14   1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.20   16
AL121589|AL121589.17 Human DNA sequence from clone RP5-1140M3 on chromosome 20. Contains  GSSs.    46   0.21   2
Z37981|Z37981.1 D.discoideum gene for protein kinase.              44   0.22   2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.49   16

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000119_93(CP000119|pid:none) Anabaena variabilis ATCC 29413 pl...    50   2e-04
BC047817_1(BC047817|pid:none) Danio rerio PWP2 periodic tryptoph...    50   2e-04
(Q54Y96) RecName: Full=WD40 repeat-containing protein smu1;            48   7e-04
(Q5KDT9) RecName: Full=Histone acetyltransferase type B subunit ...    48   0.001
AP009552_1750(AP009552|pid:none) Microcystis aeruginosa NIES-843...    47   0.002
AE2490(AE2490) WD-repeat protein [imported] - Nostoc sp. (strain...    47   0.002
(Q6CG48) RecName: Full=Nuclear distribution protein PAC1; AltNam...    47   0.002
FN314118_1(FN314118|pid:none) Schistosoma japonicum isolate Anhu...    46   0.003
(Q9NDC9) RecName: Full=Lissencephaly-1 homolog; AltName: Full=Pr...    46   0.003
AF052432_1(AF052432|pid:none) Homo sapiens katanin p80 subunit m...    46   0.003

 psg: 0.75  gvh: 0.48  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SHL185 is nuc

>SHL185F.Seq
TTATTGACCCAACAGAAACCATTAGACATTTAATAACATTACCAGGTAATAGTATACAAA
CACCAACCTTTTTATTAGCTTTTACACAAGAGGGTGTTATTTATTTGTGGGATCCAGAAA
CCCATAAACTTCAAACCATTGTACATCAATTAAAATTGGATGATAAAAGACCAATTACAT
GTAAATCTGCTGCACCAAATAAACCTGTTATCTTTTTTTCAAAAAATGAATCTAAAGATA
TTGTTGTTGTTGATTTTCATAATAAAGGATCATCACCATTTAAATTAAAAGGACATAAAA
AACCAATTTCAGCAATTGCACATCATCCAGCAAAAACCATTTTAGCATCATGTAGTACTG
ATGGTCAATTAAAGATTTGGGATACAAGAAATAATACGTCATTTTTAAATTTTGAAGAGT
TTTCATCCTATGAGAATACTAGAAATATTGAACATTCAAATCATTACTTTTTAGTATTTG
AACCAACTGGTAAATATTTAGTAATGACAGGTTCTTCAGGTTTAACTTTAGTTTATGGTG
ATTTAACTTCTCAAAATCCACAAGAAGTAATTGCAAATGGATTTATTTGTAAAGGTCAAA
ATATATTATNNNNNNNNNN

>SHL185Z.Seq
NNNNNNNNNNCTGTCATCGCAATCAAAAGAGATGCAGAGCTAAGAGGTGATGATCATGTT
TTACTCGCTGCTTGTGATAAATATTTGAATAAACAAAATAAATCAATCAATAAAGTCAAT
CCACCAGTTGTAAAGATTTTACCATGGGATCCAACAGCCACAACCAATGTTAGTATGAAA
TCGGGTTTGGATTATCTCTCCCCAATCAATTTAAATTCAATTCAAAGATATTATCCAATC
TCTTTACCATTTAGTGGTGCAAGTGCCTCTTTGAATGGTGGAAAACATAAACTATTACGT
CCTCCTGAAGAAAGCTGGCCACCTGAAGATTTTAAACATTCCGTTGCAATCACTCCTCCT
CGTACTCTAATGTCTTTGGTTGCCAATCGTTTATCAACTAAATCCCATATGTCTTCAACT
ACAACATTACGTCGTTCACCCTCAATTGAAAATATTAGAACTACCTCTACCACTTTTGAC
TCTTCAAAATTCAATACCGATAATCAAGAGCTATTCGATGATGACTCTGATGATGACTCT
GACTCTGGTGCTGATGCCGATGTCGATAGTGAAAATGAAGAAGATAGAAAATTGGTTATG
ACTGTTCCTGCCTCACTACAGCATAATGATAATTCTTCTCTAACAAATATCACCGTAACT
GATAATGATTCAAATTTAGATCAAGATATAACCTCAAATACTGGTTCTGATATTGCTGAT
TTAAATNATACTCAATTATCTTCAACTCCAACTCCAACTACAACCTTATCTTCTTAAAAT
TATATAAAAATTA

>SHL185P.Seq
TTATTGACCCAACAGAAACCATTAGACATTTAATAACATTACCAGGTAATAGTATACAAA
CACCAACCTTTTTATTAGCTTTTACACAAGAGGGTGTTATTTATTTGTGGGATCCAGAAA
CCCATAAACTTCAAACCATTGTACATCAATTAAAATTGGATGATAAAAGACCAATTACAT
GTAAATCTGCTGCACCAAATAAACCTGTTATCTTTTTTTCAAAAAATGAATCTAAAGATA
TTGTTGTTGTTGATTTTCATAATAAAGGATCATCACCATTTAAATTAAAAGGACATAAAA
AACCAATTTCAGCAATTGCACATCATCCAGCAAAAACCATTTTAGCATCATGTAGTACTG
ATGGTCAATTAAAGATTTGGGATACAAGAAATAATACGTCATTTTTAAATTTTGAAGAGT
TTTCATCCTATGAGAATACTAGAAATATTGAACATTCAAATCATTACTTTTTAGTATTTG
AACCAACTGGTAAATATTTAGTAATGACAGGTTCTTCAGGTTTAACTTTAGTTTATGGTG
ATTTAACTTCTCAAAATCCACAAGAAGTAATTGCAAATGGATTTATTTGTAAAGGTCAAA
ATATATTAT----------CTGTCATCGCAATCAAAAGAGATGCAGAGCTAAGAGGTGAT
GATCATGTTTTACTCGCTGCTTGTGATAAATATTTGAATAAACAAAATAAATCAATCAAT
AAAGTCAATCCACCAGTTGTAAAGATTTTACCATGGGATCCAACAGCCACAACCAATGTT
AGTATGAAATCGGGTTTGGATTATCTCTCCCCAATCAATTTAAATTCAATTCAAAGATAT
TATCCAATCTCTTTACCATTTAGTGGTGCAAGTGCCTCTTTGAATGGTGGAAAACATAAA
CTATTACGTCCTCCTGAAGAAAGCTGGCCACCTGAAGATTTTAAACATTCCGTTGCAATC
ACTCCTCCTCGTACTCTAATGTCTTTGGTTGCCAATCGTTTATCAACTAAATCCCATATG
TCTTCAACTACAACATTACGTCGTTCACCCTCAATTGAAAATATTAGAACTACCTCTACC
ACTTTTGACTCTTCAAAATTCAATACCGATAATCAAGAGCTATTCGATGATGACTCTGAT
GATGACTCTGACTCTGGTGCTGATGCCGATGTCGATAGTGAAAATGAAGAAGATAGAAAA
TTGGTTATGACTGTTCCTGCCTCACTACAGCATAATGATAATTCTTCTCTAACAAATATC
ACCGTAACTGATAATGATTCAAATTTAGATCAAGATATAACCTCAAATACTGGTTCTGAT
ATTGCTGATTTAAATNATACTCAATTATCTTCAACTCCAACTCCAACTACAACCTTATCT
TCTTAAAATTATATAAAAATTA