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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL181
Library SH
(Link to library)
Clone ID SHL181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13300-1|Contig-U16259-1
Original site URL
Representative seq. ID SHL181P
(Link to Original site)
Representative DNA sequence 
>SHL181 (SHL181Q) /CSM/SH/SHL1-D/SHL181Q.Seq.d/
TGGCCTACTGGAAAAAAATAAAAAATAAAAAAAAAATAAAAAAAAAATAATAATAATAAT
AAAAATAATAATAANGATAANGATAATAATAAAATATATATNTATAAAANGATNTTATAA
AATATTATATAAAGATGTAAATAAATAAAANCTCATATAATCTTAATTAANATTNTGAAA
AAAAAAAXXXXXXXXXXGATTCATATGCCNCCATTTCAGTTGATGGTATTAAAAACTCAG
ACTCTGACCAACTTGATGTCGAGCTTCAACCAGTTGTCAAATCAATTACTCAATCACAAA
CCTCTGGATCAACTGTGACAATTAAAGGTTCATTCTTTAATAAAAAGGACACTGGTTTGA
AAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTA
CTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATG
CTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAACCATTATGTCAT
CAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAA
ATACTTTGATTACAGTAAGTGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATT
CAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATTAACAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
wptgkk*kikkk*kknnnnnknnnxdxdnnkiyxykxxl*nii*rck*IKXHIILIXIXK
KK---

---DSYAXISVDGIKNSDSDQLDVELQPVVKSITQSQTSGSTVTIKGSFFNKKDTGLKIM
VGNHSCDSLTIVDTQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTS
VKQVEGGQVTIYGTNFENTLITVSVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTN
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgkk*kikkk*kknnnnnknnnxdxdnnkiyxykxxl*nii*rck*IKXHIILIXIXK
KK---

---DSYAXISVDGIKNSDSDQLDVELQPVVKSITQSQTSGSTVTIKGSFFNKKDTGLKIM
VGNHSCDSLTIVDTQTLTCSAPPGSGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTS
VKQVEGGQVTIYGTNFENTLITVSVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTN

Frame B:
glleknkk*kknkkkiiiiikiiixixiiikyixikxxykilykdvnk*xli*s*lxx*k
kk---

---ihmppfqlmvlktqtltnlmssfnqlsnqllnhkpldql*qlkvhslikrtlv*klw
leiihvil*ll*ipkhllallhqevvlkmlfhswlkmlnqnyhhhcf*iivhqplchqqv
*nklkvvkllfmvpilkil*lq*vlevnhvkmfl**iqpnllvqfqnqq*ilh*qi

Frame C:
aywkkiknkkkikkk*****k***x*x***niyx*xdxikyyikm*inkxsynln*xxek
k---

---ficxhfs*wy*klrl*pt*crastscqinysitnlwincdn*rfil**kghwfenyg
wksfm*ffdycrypntyllcstrkwy*kccfihg*rc*ikiittivfrl*stnhyvinkc
kts*rwssyylwyqf*kyfdyskcwk*im*rcfcnrfnqtylfnfkinnrsfink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL181 (SHL181Q) /CSM/SH/SHL1-D/SHL181Q.Seq.d/                       1025   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                       1015   0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/                       1015   0.0
SHG859 (SHG859Q) /CSM/SH/SHG8-C/SHG859Q.Seq.d/                       1015   0.0
SHG451 (SHG451Q) /CSM/SH/SHG4-C/SHG451Q.Seq.d/                       1015   0.0
SHD440 (SHD440Q) /CSM/SH/SHD4-B/SHD440Q.Seq.d/                       1015   0.0
SHD289 (SHD289Q) /CSM/SH/SHD2-D/SHD289Q.Seq.d/                       1015   0.0
SHD263 (SHD263Q) /CSM/SH/SHD2-C/SHD263Q.Seq.d/                       1015   0.0
SHB402 (SHB402Q) /CSM/SH/SHB4-A/SHB402Q.Seq.d/                       1015   0.0
SHB372 (SHB372Q) /CSM/SH/SHB3-C/SHB372Q.Seq.d/                       1015   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC178280|AC178280.1 Strongylocentrotus purpuratus clone R3-3093L23, WORKING DRAFTSEQUENCE, 33 unordered pieces.    44   4.5    1
AQ723695|AQ723695.1 HS_5379_A1_B12_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=955 Col=23 Row=C, genomic survey sequence.    44   4.5    1
AF481231|AF481231.1 Cucumis sativus PEPCK (Pepck) gene, complete cds.    44   4.5    1
AL157817|AL157817.13 Human DNA sequence from clone RP11-457D13 on chromosome  13q14.2-21.1. Contains an RPL5 (60S ribosomal protein 5) pseudogene. Contains STSs, GSSs, ESTs and a CpG island.    44   4.5    1
AP002828|AP002828.1 Homo sapiens genomic DNA, chromosome 11q clone:RP11-627J14, WORKING DRAFT SEQUENCE, 20 unordered pieces.    32   7.9    2
AC146594|AC146594.3 Mus musculus BAC clone RP24-155O13 from chromosome 14, complete sequence.    32   7.9    2
AC069267|AC069267.2 Homo sapiens chromosome 3 clone RP11-299P20 map 3p, WORKING DRAFT SEQUENCE, 7 unordered pieces.    32   8.0    2
AP001829|AP001829.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-254C5.    32   8.1    2
dna update 2006. 7. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    78   3e-13
(Q06885) RecName: Full=Glycoprotein gp100; AltName: Full=P29F8; ...    60   8e-08
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    59   2e-07
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    55   2e-06
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...    52   2e-05
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    51   4e-05
EU643473_4(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep...    50   7e-05
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...    50   9e-05
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS...    50   9e-05
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...    50   9e-05
protein update 2009. 5.30
PSORT 

 psg: 0.88  gvh: 0.40  alm: 0.45  top: 0.50  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SHL181 is cyt
5' end seq. ID SHL181F
5' end seq. 
>SHL181F.Seq
TGGCCTACTGGAAAAAAATAAAAAATAAAAAAAAAATAAAAAAAAAATAATAATAATAAT
AAAAATAATAATAANGATAANGATAATAATAAAATATATATNTATAAAANGATNTTATAA
AATATTATATAAAGATGTAAATAAATAAAANCTCATATAATCTTAATTAANATTNTGAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 197
3' end seq. ID SHL181Z
3' end seq. 
>SHL181Z.Seq
NNNNNNNNNNGATTCATATGCCNCCATTTCAGTTGATGGTATTAAAAACTCAGACTCTGA
CCAACTTGATGTCGAGCTTCAACCAGTTGTCAAATCAATTACTCAATCACAAACCTCTGG
ATCAACTGTGACAATTAAAGGTTCATTCTTTAATAAAAAGGACACTGGTTTGAAAATTAT
GGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTACTTGCTC
TGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATGCTGAATC
AAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAACCATTATGTCATCAACAAG
TGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAAATACTTT
GATTACAGTAAGTGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATTCAACCAA
ACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATTAACAAATT
Length of 3' end seq. 530
Connected seq. ID SHL181P
Connected seq. 
>SHL181P.Seq
TGGCCTACTGGAAAAAAATAAAAAATAAAAAAAAAATAAAAAAAAAATAATAATAATAAT
AAAAATAATAATAANGATAANGATAATAATAAAATATATATNTATAAAANGATNTTATAA
AATATTATATAAAGATGTAAATAAATAAAANCTCATATAATCTTAATTAANATTNTGAAA
AAAAAAA----------GATTCATATGCCNCCATTTCAGTTGATGGTATTAAAAACTCAG
ACTCTGACCAACTTGATGTCGAGCTTCAACCAGTTGTCAAATCAATTACTCAATCACAAA
CCTCTGGATCAACTGTGACAATTAAAGGTTCATTCTTTAATAAAAAGGACACTGGTTTGA
AAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTA
CTTGCTCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATG
CTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAACCATTATGTCAT
CAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAA
ATACTTTGATTACAGTAAGTGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATT
CAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATTAACAAATT
Length of connected seq. 707
Full length Seq ID -
Full length Seq. -
Length of full length seq. -