>SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/
XXXXXXXXXXAATAGTGGTGCTGCAACTGGAGCAAATAGTGGTGCTGCAANTGGAGCAAA
TAGTGGCGCTGCAACTGGAGCAAATAGTGGTGCTGCAACTGGTGCAAATAGTGGAAACAA
TGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGC
TGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGC
AGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGC
TGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGC
AAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCC
TGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGC
AGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAAC
GGTCACACCAACGCCNA

---SGAATGANSGAAXGANSGAATGANSGAATGANSGNNAAVTGAANGNNGAAAGANSGA
ATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAA
TAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAA
TAASTTGRNPRNPTSRAPTVTPTP

Frame A:
---ivvlqleqivvlqxeqivalqleqivvlqlvqivetmpl*lvlqmeimalqleqivv
pqllqivvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqivvl
qllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlmlq
qpqhqlqaetqeiqqvelqrshqrx


Frame B:
---*wccnwsk*wccxwsk*wrcnwsk*wccnwck*wkqcrcnwcckwk*wrcswsk*wc
rncck*wcrncck*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*wcck*wcc
ncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*ccs
nrsinyrqkpkksnk*ssnghtna


Frame C:
---SGAATGANSGAAXGANSGAATGANSGAATGANSGNNAAVTGAANGNNGAAAGANSGA
ATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAA
TAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAA
TAASTTGRNPRNPTSRAPTVTPTP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                       1193   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                       1193   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                       1193   0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/                       1193   0.0
CHI407 (CHI407Q) /CSM/CH/CHI4-A/CHI407Q.Seq.d/                       1193   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                       1187   0.0
SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/                       1187   0.0
AHL869 (AHL869Q) /CSM/AH/AHL8-C/AHL869Q.Seq.d/                       1187   0.0
SHG517 (SHG517Q) /CSM/SH/SHG5-A/SHG517Q.Seq.d/                       1185   0.0
SHB145 (SHB145Q) /CSM/SH/SHB1-B/SHB145Q.Seq.d/                       1174   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence.    30   0.003  3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence.    30   0.004  3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    30   0.008  3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    28   0.029  3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    28   0.034  3
AY887028|AY887028.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate R66 MAT-1-2 gene, complete cds.    34   0.17   2
AY887027|AY887027.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate YU1 MAT-1-2 gene, complete cds.    34   0.17   2
AY887029|AY887029.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate V19 MAT-1-2 gene, complete cds.    34   0.17   2
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence.    34   0.18   2
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end.      48   0.25   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    78   2e-13

 psg: 0.75  gvh: 0.44  alm: 0.54  top: 0.53  tms: 0.00  mit: -0.00  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHL166 is nuc

>SHL166Z.Seq
NNNNNNNNNNAATAGTGGTGCTGCAACTGGAGCAAATAGTGGTGCTGCAANTGGAGCAAA
TAGTGGCGCTGCAACTGGAGCAAATAGTGGTGCTGCAACTGGTGCAAATAGTGGAAACAA
TGCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGG
TGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGC
TGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGC
AGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGC
TGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGC
AAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCC
TGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGC
AGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAAC
GGTCACACCAACGCCNA