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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHL126
Library SH
(Link to library)
Clone ID SHL126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID SHL126P
(Link to Original site)
Representative DNA sequence 
>SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/
TGGCCTACTGGAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXTCACCAGGTGGTA
CACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGG
CTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACT
TCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTC
TCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCA
TTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTAT
GGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTG
GTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTG
CCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGAC
TTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCAT
ACAGTGCCACTCGTATTCTTTCTGGTTCTGAAGATGATGAATNAATCATTTAACTAACTA
AATACAATAAATAAATANATAAATAAATAAAATAAAATAAAATAAAATAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
wptgknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---SPGGTPDVVFFSGQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHE
EEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSV
FWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIG
DGVRFIPYSATRILSGSEDDEXII*ltkynk*ixk*ik*nkik*n
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---SPGGTPDVVFFSGQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHE
EEHDDEALYTGHHGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSV
FWERILIGQVERGNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIG
DGVRFIPYSATRILSGSEDDEXII*ltkynk*ixk*ik*nkik*n

Frame B:
gllekti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---hqvvhqmlssslvkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttk
rnmmmklstlvitvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsylly
fgnvfslvksnvvihswlslvlvlg*vplllyfylwnpfllsctlldfig*nskinsilv
mvldsfhtvplvfflvlkmmnxsfn*lntinkxink*nkik*nk

Frame C:
aywkklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---trwytrcclllwsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprr
gt***sslhwssr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifci
lgtyshwssrtw*silgfrwfwclvrclccctftygipfcflars*tslgripk*ilyw*
wc*ihsiqchsysfwf*r**xnhltn*iq*inx*inkik*nkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                       1205   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1199   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1189   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1185   0.0
AHB885 (AHB885Q) /CSM/AH/AHB8-D/AHB885Q.Seq.d/                       1185   0.0
SHE135 (SHE135Q) /CSM/SH/SHE1-B/SHE135Q.Seq.d/                       1170   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1168   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                       1158   0.0
AHO215 (AHO215Q) /CSM/AH/AHO2-A/AHO215Q.Seq.d/                       1154   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1150   0.0
own update 2002.12. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1144   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-13  2
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   9e-11  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   9e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   9e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   6e-09  5
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   7e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
DT466948|DT466948.1 GH_CHX19K13.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX19K13 5', mRNA sequence.    72   2e-08  1
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
dna update 2006. 6.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   391   e-107
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   391   e-107
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   203   5e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   200   5e-50
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   200   5e-50
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   200   5e-50
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   199   9e-50
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   199   9e-50
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   199   1e-49
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   195   2e-48
protein update 2009. 5.30
PSORT 

 psg: 0.85  gvh: 0.62  alm: 0.18  top: 0.57  tms: 0.20  mit: 0.29  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHL126 is end
5' end seq. ID SHL126F
5' end seq. 
>SHL126F.Seq
TGGCCTACTGGAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 167
3' end seq. ID SHL126Z
3' end seq. 
>SHL126Z.Seq
NNNNNNNNNNTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGT
TCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACC
ATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGA
AGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGG
TGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAA
TACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGT
ATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGT
TGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTC
TGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGG
TGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTTTCTGGTTCTGAAGATGA
TGAATNAATCATTTAACTAACTAAATACAATAAATAAATANATAAATAAATAAAATAAAA
TAAAATAAAATAAAAC
Length of 3' end seq. 676
Connected seq. ID SHL126P
Connected seq. 
>SHL126P.Seq
TGGCCTACTGGAAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA----------TCACCAGGTGGTA
CACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGG
CTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACT
TCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTC
TCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCA
TTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTAT
GGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTG
GTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTG
CCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGAC
TTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCAT
ACAGTGCCACTCGTATTCTTTCTGGTTCTGAAGATGATGAATNAATCATTTAACTAACTA
AATACAATAAATAAATANATAAATAAATAAAATAAAATAAAATAAAATAAAAC
Length of connected seq. 823
Full length Seq ID -
Full length Seq. -
Length of full length seq. -