>SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/
TTACAAACTTTGGGTAGTTCTCCGAGATGTGAATATACTGCTTCAAACATTCTAATGGTT
ACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGA
ATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGCAACCACCACAA
GATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTG
GTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCG
GTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACC
ATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATC
ACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAA
GTTTTAGATGTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACT
CTTAAAGGTAATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTCXXXXXXXXXXTTC
AGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGG
TGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCT
ACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCA
ATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTT
ATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATC
AAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGA
ACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGA
TATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAA
TAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATG
TAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACAT
TTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTAC
TGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAA
AGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAANAAAGNAAAGAAG

LQTLGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLQPPQ
DSTPVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNAT
ITIPNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTIQGPSIHRMGAIDLT
LKGNASVSSCSVDGA---

---SDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKD
DEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKT
VSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDG
NIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKS
KKTKEQINKEKEDKKKQAKXXKE

Frame A:
LQTLGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLQPPQ
DSTPVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNAT
ITIPNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTIQGPSIHRMGAIDLT
LKGNASVSSCSVDGA---

---frhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg
**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkn
cft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw
*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqkqkeqi
kenqrtnqqrkrrqketskxkxr

Frame B:
yklwvvlrdvnillqtf*wlhwvvvkvyqlannwnflkveslqkmvvriiikl*hcnhhk
iqlqw*ilklqmf*ihvvhwy*mlviqkvvmekh*pmigrlvgqiqtln*iiywikimqp
*qfqmifchlvklillhlksqig*rnliaqvfq*qrkrvkf*m*qfkvqvfivwvqli*l
lkvmlqfqvvqlmal---

---SDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKD
DEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKT
VSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDG
NIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKS
KKTKEQINKEKEDKKKQAKXXKE

Frame C:
tnfg*fsem*iycfkhsngyig*w*kciswptigifsrwnhfkrw**e*lsnyniatttr
fnssgry*sskcfrfm*sigirc*sfkrw*wksinl*lvg*wgrykhsik*sigsk*cnh
nnsk*sfviwsnlyfyt*nhklvkei**rkcfsnkerg*sfrcnnsrskyssygcn*sns
*r*cfsfklfs*wrf---

---qtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrm
mkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqkl
fhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mv
ifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtnq
rkpknkstkkkktkrnkqxkxkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/                       2462   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1338   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1338   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1338   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1338   0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       1338   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1338   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1338   0.0
CHS207 (CHS207Q) /CSM/CH/CHS2-A/CHS207Q.Seq.d/                       1338   0.0
CHS192 (CHS192Q) /CSM/CH/CHS1-D/CHS192Q.Seq.d/                       1338   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFTSEQUENCE, 51 unordered pieces.    48   0.56   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.56   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.56   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.56   1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.1    2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.1    2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence.    46   2.2    1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence.    46   2.2    1
AC092422|AC092422.3 Homo sapiens chromosome 3 clone RP11-537O8, complete sequence.    46   2.2    1
BQ792443|BQ792443.1 EST 8163 Red Grape berries Lambda TriplEx2 Library Vitis vinifera cDNA clone CM001C02 3', mRNA sequence.    32   5.8    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001332_186(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    59   5e-07
EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    57   1e-06
CP001327_669(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    55   4e-06
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003

 psg: 0.94  gvh: 0.54  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.23  mip: 0.03
 nuc: 0.17  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHL119 is cyt

>SHL119F.Seq
TTACAAACTTTGGGTAGTTCTCCGAGATGTGAATATACTGCTTCAAACATTCTAATGGTT
ACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGA
ATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGCAACCACCACAA
GATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTG
GTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCG
GTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACC
ATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATC
ACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAA
GTTTTAGATGTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACT
CTTAAAGGTAATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTCNNNNNNNNNN

>SHL119Z.Seq
NNNNNNNNNNTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAAA
GAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAA
CATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGG
ATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTC
CATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAA
TTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAA
CTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATC
AAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTT
GGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATG
GTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAAT
CCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTG
CAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAAT
CAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAN
AAAGNAAAGAAG

>SHL119P.Seq
TTACAAACTTTGGGTAGTTCTCCGAGATGTGAATATACTGCTTCAAACATTCTAATGGTT
ACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGA
ATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGCAACCACCACAA
GATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTG
GTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCG
GTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACC
ATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATC
ACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAA
GTTTTAGATGTAACAATTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACT
CTTAAAGGTAATGCTTCAGTTTCAAGTTGTTCAGTTGATGGCGCTTC----------TTC
AGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGG
TGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCT
ACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCA
ATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTT
ATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATC
AAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGA
ACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGA
TATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAA
TAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATG
TAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACAT
TTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTAC
TGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAA
AGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAANAAAGNAAAGAAG