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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK865
Library SH
(Link to library)
Clone ID SHK865
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHK865P
(Link to Original site)
Representative DNA sequence 
>SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/
ATTTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAA
AAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTT
TTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCA
TTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATT
ATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAAXX
XXXXXXXXTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGT
GTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAAC
ATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTA
ATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAAC
GGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTT
CCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCA
GAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTT
GTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAA
CAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAA
GTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATT
GATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTT
CTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTC
AATTTTAAAACAATAAAAATTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
fnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL
MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS
EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK
VWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlf
nfktiki
Translated Amino Acid sequence (All Frames) 
Frame A:
isikqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpaflffytittnpis
llptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---wfn*iksy*fhswyhsrcwcs*mwyl*lcq*drc*pqhcw*r*ngrncnclckh*cf
nvnhhlnpnlnlsiinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrcl
rsqss*nclwyciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*
slvnckftm*l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpf
qf*nnknl

Frame B:
fqsnkqktti*knnnl**sknn*ritncffllltinsniff*infqlfcfftqsqptlyh
yyqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---GSIESKVIDFTHGTIQGVGALKCGTCNFANKIAANLNIVGNVKMAATATVYANIDAL
MSITTSTQTSISQSSTKTVNGKTTTQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVAS
EANQAKIASGTVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASK
VWSIVNSPCNCECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlf
nfktiki

Frame C:
fnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklissfsvflhnhnqpyii
ttnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---vqlnqkllislmvpfkvlvllnvvlvtlpirslltstllvtlkwpqlqlsmqtlml*
cqsppqpkpqslnhqprlstvrpplnhhqahhhpslnnsfq*sfvqvllmllvtsmslpq
kpiklklplvlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplk
fgql*ihhvtvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfs
ilkq*kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        900   0.0
SLA101 (SLA101Q) /CSM/SL/SLA1-A/SLA101Q.Seq.d/                        900   0.0
SHL563 (SHL563Q) /CSM/SH/SHL5-C/SHL563Q.Seq.d/                        900   0.0
SHK865 (SHK865Q) /CSM/SH/SHK8-C/SHK865Q.Seq.d/                        900   0.0
SHK762 (SHK762Q) /CSM/SH/SHK7-C/SHK762Q.Seq.d/                        900   0.0
SHK536 (SHK536Q) /CSM/SH/SHK5-B/SHK536Q.Seq.d/                        900   0.0
SHG713 (SHG713Q) /CSM/SH/SHG7-A/SHG713Q.Seq.d/                        900   0.0
SHG514 (SHG514Q) /CSM/SH/SHG5-A/SHG514Q.Seq.d/                        900   0.0
SHG338 (SHG338Q) /CSM/SH/SHG3-B/SHG338Q.Seq.d/                        900   0.0
SHG152 (SHG152Q) /CSM/SH/SHG1-C/SHG152Q.Seq.d/                        900   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   900   0.0    2
AX344185|AX344185.1 Sequence 32 from Patent WO0200926.             40   0.083  4
AX251781|AX251781.1 Sequence 42 from Patent WO0168911.             40   0.083  4
BD460245|BD460245.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.083  4
BD452167|BD452167.1 Diagnosis of Diseases Associated with Cell Cycle.    40   0.083  4
AJ297856|AJ297856.1 Lucilia sericata partial bcd gene for bicoid protein.    50   0.11   1
AL845362|AL845362.4 Zebrafish DNA sequence from clone CH211-142H2 in linkage group 20.    38   0.33   3
AL395211|AL395211.1 T7 end of clone AR0AA022B11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    48   0.42   1
AC162431|AC162431.1 Papio hamadryas clone RP41-121N17, WORKING DRAFT SEQUENCE.    48   0.42   1
AC127176|AC127176.3 Rattus norvegicus clone CH230-267P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.42   1
dna update 2006. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   269   1e-70
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    34   9.3
protein update 2009. 1.17
PSORT 

 psg: 0.69  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHK865 is cyt
5' end seq. ID SHK865F
5' end seq. 
>SHK865F.Seq
ATTTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAA
AAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTT
TTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCA
TTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATT
ATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAANN
NNNNNNNN
Length of 5' end seq. 308
3' end seq. ID SHK865Z
3' end seq. 
>SHK865Z.Seq
NNNNNNNNNNTGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAG
GTGTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCA
ACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTT
TAATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCA
ACGGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCG
TTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCT
CAGAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAG
TTGTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTC
AACAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTA
AAGTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAA
TTGATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTT
TTCTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTT
TCAATTTTAAAACAATAAAAATTTA
Length of 3' end seq. 745
Connected seq. ID SHK865P
Connected seq. 
>SHK865P.Seq
ATTTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATAATTTATAGTAAAGTAA
AAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTATAAATTCCAATATTTT
TTTTTAAATTAATTTCCAGCTTTTCTGTTTTTTTACACAATCACAACCAACCCTATATCA
TTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAATTATTATTTGTTGTATT
ATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAACAAACAAAAAAAAAA--
--------TGGTTCAATTGAATCAAAAGTTATTGATTTCACTCATGGTACCATTCAAGGT
GTTGGTGCTCTTAAATGTGGTACTTGTAACTTTGCCAATAAGATCGCTGCTAACCTCAAC
ATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTCTATGCAAACATTGATGCTTTA
ATGTCAATCACCACCTCAACCCAAACCTCAATCTCTCAATCATCAACCAAGACTGTCAAC
GGTAAGACCACCACTCAATCATCATCAAGCTCATCATCATCCATCTCTAAACAATTCGTT
CCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCTGGTAACCTCAATGTCGTTGCCTCA
GAAGCCAATCAAGCTAAAATTGCCTCTGGTACTGTATTCAAATTCATCTCAGCCCCAGTT
GTTAAAGGTAATGTCTCCTCAGTTAGCTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAA
CAAGCTGCCGGTGCTGCTGCTGCTGCTGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAA
GTTTGGTCAATTGTAAATTCACCATGTAACTGTGAATGTGGATTGAAGAGATTATAAATT
GATTCAACTCCTCCTCTCCAATGACAATAAATTAAAATAATACAACTCATTCTTATTTTT
CTTTATTCTAACCAATGTATTTGTCAATTAACTTATTAACTTTTTAAACACACCCTTTTC
AATTTTAAAACAATAAAAATTTA
Length of connected seq. 1033
Full length Seq ID -
Full length Seq. -
Length of full length seq. -