>SHK809 (SHK809Q) /CSM/SH/SHK8-A/SHK809Q.Seq.d/
XXXXXXXXXXGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGC
AGTTCAAGAGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCTGTAAA
CTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACA
AGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGA
GTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAA
ATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATT
TTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACA
ACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAA
AGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGT
CTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAA
TAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAAT
TAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAA

---PERLYEEIHNSNLNKAVQEAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ

Frame A:
---lqrdymkkfiipi*ikqfkrlkklkdxkmvmvhll*tlirl*lkwemlkimklpmnk
mplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnf
qikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmls
t*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnks


Frame B:
---sreti*rns*fqfe*sssrg*rn*ktxkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnp


Frame C:
---PERLYEEIHNSNLNKAVQEAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQ

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        765   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        765   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        765   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        765   0.0
SHL732 (SHL732Q) /CSM/SH/SHL7-B/SHL732Q.Seq.d/                        765   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        765   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        765   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        765   0.0
SHL546 (SHL546Q) /CSM/SH/SHL5-B/SHL546Q.Seq.d/                        765   0.0
SHL319 (SHL319Q) /CSM/SH/SHL3-A/SHL319Q.Seq.d/                        765   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   765   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.028  7
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence.    44   0.21   2
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   0.27   11
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.28   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.28   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.28   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.28   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.28   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   312   7e-84
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.33
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    37   0.43
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.57
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   0.74
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    36   0.97
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   1.3
T28139(T28139) PK4 protein kinase - malaria parasite (Plasmodium...    36   1.3
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.3
AL844505_277(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.3

 psg: 0.75  gvh: 0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SHK809 is nuc

>SHK809Z.Seq
NNNNNNNNNNGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGC
AGTTCAAGAGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCTGTAAA
CTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACA
AGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGA
GTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAA
ATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATT
TTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACA
ACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAA
AGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGT
CTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAA
TAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAAT
TAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAA