>SHK804 (SHK804Q) /CSM/SH/SHK8-A/SHK804Q.Seq.d/
XXXXXXXXXXAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCCAATGGAATCTTTTCG
AAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCT
TTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCG
ATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTT
TCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTG
CTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATC
CACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTT
GTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGG
ATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAG
ATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAG
TCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCC

---kiv*ELEMNQIQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQET

Frame A:
---kiv*ELEMNQIQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGKIEPINKD
ALRKIYGWFGKEIPKEATQVSHKVAEQQAKRDALHAQET


Frame B:
---rscks*k*trsngifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*pi
mnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvih
mipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwisln*vspifsvvrlnqsikm
hsvksmvglvkksqrkqlkslikllnnklkemlymhkkp


Frame C:
---drvrarnepdpmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr*
*tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwlst
*flfr*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*rc
tp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK622 (VHK622Q) /CSM/VH/VHK6-A/VHK622Q.Seq.d/                       1289   0.0
SHK804 (SHK804Q) /CSM/SH/SHK8-A/SHK804Q.Seq.d/                       1289   0.0
AHD310 (AHD310Q) /CSM/AH/AHD3-A/AHD310Q.Seq.d/                       1289   0.0
VHJ815 (VHJ815Q) /CSM/VH/VHJ8-A/VHJ815Q.Seq.d/                       1275   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1273   0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/                       1273   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1273   0.0
VHN486 (VHN486Q) /CSM/VH/VHN4-D/VHN486Q.Seq.d/                       1273   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1273   0.0
VHJ588 (VHJ588Q) /CSM/VH/VHJ5-D/VHJ588Q.Seq.d/                       1273   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.             1221   0.0    2
CL553671|CL553671.2 OB__Ba0001O16.r OB__Ba Oryza brachyantha genomic clone OB__Ba0001O16 3', genomic survey sequence.    48   0.26   1
CX538721|CX538721.1 s13dNF0IG03GS020_460694 Germinating Seed Medicago truncatula cDNA, mRNA sequence.    36   0.43   3
EC358866|EC358866.1 IMMUNEF088882D5 POSSUM_01-C-POSSUM-IMMUNE-2KB Trichosurus vulpecula cDNA clone 1061024540571, mRNA sequence.    44   4.1    1
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   4.1    1
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   4.1    1
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   4.1    1
CK473247|CK473247.1 AGENCOURT_17619315 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128539 5', mRNA sequence.    44   4.1    1
CV116033|CV116033.1 AGENCOURT_31532130 NIH_MGC_269 Rattus norvegicus cDNA clone IMAGE:7458092 5', mRNA sequence.    44   4.1    1
CB788513|CB788513.1 AMGNNUC:MRPE3-00057-A10-A placenta embryo D17 (10379) Rattus norvegicus cDNA clone mrpe3-00057-a10 5', mRNA sequence.    44   4.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   436   e-122
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   436   e-122
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...   130   3e-29
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   124   2e-27
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...   122   9e-27
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   122   9e-27
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....   121   2e-26
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   121   2e-26
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   120   3e-26
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   120   3e-26

 psg: 0.75  gvh: 0.51  alm: 0.25  top: 0.67  tms: 0.27  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SHK804 is pla

>SHK804Z.Seq
NNNNNNNNNNAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCCAATGGAATCTTTTCG
AAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCT
TTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCG
ATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTT
TCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTG
CTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATC
CACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTT
GTGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGG
ATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAG
ATGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAG
TCTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCC