SHK802 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHK802
Library	SH (Link to library)
Clone ID	SHK802 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11477-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHK8-A/SHK802Q.Seq.d/
Representative seq. ID	SHK802P (Link to Original site)
Representative DNA sequence	>SHK802 (SHK802Q) /CSM/SH/SHK8-A/SHK802Q.Seq.d/ AACAACAACAACAACAACAACAAGGTAGCGAATCACCAAATTCAACAACACCAAAATCAT CAACACCAACTCAAACTAGACATCATAGTGTATTATCAAGAAATCCATCATATACATCAT TGAAAAGTTCAGGTGGATTTTCAAAACCATCACCATCATCATCAACATCGACACCACCAT CAACATTTGCATCACCATTATCAATTGCTCAAACTTCATCAACCACCACTACCACTACTA CCACCACCACCACTACATCTTCTTCTTCAACACCACCACCATTAAGAGCAAACAATTCAA CATCATCAACTCCATTAAATTCAAGTACAGGTATTAAACAAAGTGATATTGTAATTGAAG GTAATTTAACAGAATTAATACCAGGTTTATTATGGAATTCAAATACAGAGAAATGGTATG TAGTTTCAGAGGGTATGCTTTATTCATACAAGAATAAATCATTGAAACAATTGGATCCAT TAGAGACTATTCATTTGGAGAAAGCAATCTCTGCACATAAAACCAAAGAAATTTTCACAA TTCAAGGTTTTAGTTTCCAATTGTCAACACCAAATCGTATCATTCATTTATTAGCAAAAA CCAAAGAAGAACGTGGATCATGGTTATCAGTATTACGTCAAAATCTAAAXXXXXXXXXXT CTTAAAAGAAGGTAGTGAATCCAATGAATTTTGGTCAGCTTTTGAAAGTACAGGTGGTAG ACAAAAATACTTTAATGATATTATGATTCAAAGTAGTTCAATTCCAACCTCATTCACTTA TAAACCACGTTTCTTTGTTTGTAGTAATGCATCGGGTATCGTTGAAGTTACAGAGGAATC ACCATTCTCTCAAGATGATCTAGATATTGGATCCGTTTGTATATTGGATGTACAAAGTCA TATTTACCTTTGGATTGGTAGTCGTGCAACTCATCGTACTAAACGTGCCTCTATGGAAGT TGTATTAAACTTTATTGAAACTTCAAAATTGGGTCATTCAAAAGAGCACACTAAAGTACT AATTGCAACTCCATTCGAAGAACCAATTGGTTTCAAAAGTTATTTCCGTGCTTGGTGTAC CTCTAAATATCCAAAGAATAAATTACCTTTGGTTGAAAAAGATGGTATCCCAGTTGAACA AGTACTTAAAGATTATCTCAAAGAAATCTATACCTATGAAGAGTTATTGGCCGATCCATT ACCTGCTGGCGTTGACTCTACTAAATTGGATACTTATCTCAATGATGAAGATTTTGAAAA AGTTTTCAAAATGACTAGAACTGAATGGTTAAAGATTCCAGCTTGGAAGAGAGAAGGTAT TAAAAAAGAATTATTCTTATTTTAAATAATAAAAATAATCTCTATCTATAATATACATTC ATATAAATACCTATATACATATATTTAATACATATAAATTTACTATTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	QQQQQQQGSESPNSTTPKSSTPTQTRHHSVLSRNPSYTSLKSSGGFSKPSPSSSTSTPPS TFASPLSIAQTSSTTTTTTTTTTTTSSSSTPPPLRANNSTSSTPLNSSTGIKQSDIVIEG NLTELIPGLLWNSNTEKWYVVSEGMLYSYKNKSLKQLDPLETIHLEKAISAHKTKEIFTI QGFSFQLSTPNRIIHLLAKTKEERGSWLSVLRQNL--- ---LKEGSESNEFWSAFESTGGRQKYFNDIMIQSSSIPTSFTYKPRFFVCSNASGIVEVT EESPFSQDDLDIGSVCILDVQSHIYLWIGSRATHRTKRASMEVVLNFIETSKLGHSKEHT KVLIATPFEEPIGFKSYFRAWCTSKYPKNKLPLVEKDGIPVEQVLKDYLKEIYTYEELLA DPLPAGVDSTKLDTYLNDEDFEKVFKMTRTEWLKIPAWKREGIKKELFLFiikiisiyn ihsykylytyiyi*iyylk
Translated Amino Acid sequence (All Frames)	Frame A: nnnnnnnkvanhqiqqhqnhqhqlkldiivyyqeihhihhkvqvdfqnhhhhhqhrhhh qhlhhhyqllklhqpplpllpppplhlllqhhhheqtiqhhqlhiqvqvlnkvillk viqnyqvyygiqiqrngmfqrvcfihtrinhnnwihrlfiwrkqslhikpkkfsq fkvlvsncqhqivsfiyqkpkknvdhgyqyyvki--- ---skkvvnpmnfgqllkvqvvdkntlmilfkvvqfqphslinhvslfvvmhrvslkl qrnhhslkmiildpfvywmykviftfglvvvqlivlnvplwklytllklqnwviqkst lkylqlhsknqlvskvisvlgvplniqrinylwlkkmvsqlnkylkiiskksipmksyw pihyllaltllnwilismmkilkkfsklelngrfqlgrekvlkknysyfk*kslsi iyihintyihifntykfti* Frame B: tttttttrritkfnntkiintnsntsciikksiiyiiekfrwifktitiiinidtti nicitiincsnfinhhyhyyhhhhyifffntttikskqfniinsikfkyrytkycnr fnrintrfimefkyremvcsfrgyalfiqeiietigsirdysfgesnlctnqrnfhn srffpivntksyhsfisknqrrtwimvisitsksk--- ---lkrr*iqilvsfkyrwtkil*yydskfnsnlihlttflclcigyrsy rgitilsrsrywirlyigctksylpldwscnssytclygsciklynfkigsfkrah stncnsirrtnwfqklfpclvyliskeitfgkrwypststrlsqrnlylrvig rsitcwrlyigylsqrfksfqndnmvkdssleerrykriililnnknnlyl ytfiipiyiylihinllfk Frame C: QQQQQQQGSESPNSTTPKSSTPTQTRHHSVLSRNPSYTSLKSSGGFSKPSPSSSTSTPPS TFASPLSIAQTSSTTTTTTTTTTTTSSSSTPPPLRANNSTSSTPLNSSTGIKQSDIVIEG NLTELIPGLLWNSNTEKWYVVSEGMLYSYKNKSLKQLDPLETIHLEKAISAHKTKEIFTI QGFSFQLSTPNRIIHLLAKTKEERGSWLSVLRQNL--- ---LKEGSESNEFWSAFESTGGRQKYFNDIMIQSSSIPTSFTYKPRFFVCSNASGIVEVT EESPFSQDDLDIGSVCILDVQSHIYLWIGSRATHRTKRASMEVVLNFIETSKLGHSKEHT KVLIATPFEEPIGFKSYFRAWCTSKYPKNKLPLVEKDGIPVEQVLKDYLKEIYTYEELLA DPLPAGVDSTKLDTYLNDEDFEKVFKMTRTEWLKIPAWKREGIKKELFLFiikiisiyn ihsykylytyiyiiyylk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHK802 (SHK802Q) /CSM/SH/SHK8-A/SHK802Q.Seq.d/ 2085 0.0 AFI116 (AFI116Q) /CSM/AF/AFI1-A/AFI116Q.Seq.d/ 1326 0.0 CHI516 (CHI516Q) /CSM/CH/CHI5-A/CHI516Q.Seq.d/ 1320 0.0 AHI567 (AHI567Q) /CSM/AH/AHI5-C/AHI567Q.Seq.d/ 1320 0.0 SHJ849 (SHJ849Q) /CSM/SH/SHJ8-C/SHJ849Q.Seq.d/ 1289 0.0 AHN388 (AHN388Q) /CSM/AH/AHN3-D/AHN388Q.Seq.d/ 1205 0.0 SSB880 (SSB880Q) /CSM/SS/SSB8-D/SSB880Q.Seq.d/ 1114 0.0 AHC823 (AHC823Q) /CSM/AH/AHC8-A/AHC823Q.Seq.d/ 1068 0.0 AHF158 (AHF158Q) /CSM/AH/AHF1-C/AHF158Q.Seq.d/ 1009 0.0 AHD338 (AHD338Q) /CSM/AH/AHD3-B/AHD338Q.Seq.d/ 975 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AJ427856\|AJ427856.1 Dictyostelium discoideum ORF encoding villidin. 1342 0.0 1 U78754\|U78754.1 Dictyostelium discoideum villin (vilA) mRNA, partial cds. 1342 0.0 1 AC148477\|AC148477.3 Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 50 1e-04 2 BZ393782\|BZ393782.1 EINAM68TR EI_10_12_KB Entamoeba invadens genomic clone EINAM68, DNA sequence. 48 1e-04 2 AC177620\|AC177620.1 Strongylocentrotus purpuratus clone R3-1020P15, WORKING DRAFT SEQUENCE, 19 unordered pieces. 58 6e-04 1 AC176618\|AC176618.1 Strongylocentrotus purpuratus clone R3-3079N11, WORKING DRAFT SEQUENCE, 19 unordered pieces. 58 6e-04 1 AC111852\|AC111852.3 Rattus norvegicus clone CH230-12H7, * SEQUENCING IN PROGRESS *, 10 unordered pieces. 46 0.002 2 AC016765\|AC016765.2 Homo sapiens chromosome 11 clone RP11-555F1, WORKING DRAFT SEQUENCE, 20 unordered pieces. 56 0.002 1 AC108448\|AC108448.12 Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence. 56 0.002 1 AC173359\|AC173359.2 Strongylocentrotus purpuratus clone R3-3074P23, WORKING DRAFT SEQUENCE, 22 unordered pieces. 50 0.003 3
dna update	2006. 6.24
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AJ427856_1(AJ427856\|pid:none) Dictyostelium discoideum ORF encod... 451 e-125 (Q8WQ85) RecName: Full=Villidin; 451 e-125 BC135895_1(BC135895\|pid:none) Xenopus tropicalis hypothetical pr... 114 1e-23 DQ453501_1(DQ453501\|pid:none) Heliocidaris erythrogramma advilli... 109 2e-22 DQ453500_1(DQ453500\|pid:none) Heliocidaris tuberculata advillin ... 108 5e-22 BC054960_1(BC054960\|pid:none) Xenopus laevis villin 1, mRNA (cDN... 107 8e-22 EU334660_1(EU334660\|pid:none) Strongylocentrotus purpuratus vill... 103 1e-20 DQ453502_1(DQ453502\|pid:none) Strongylocentrotus purpuratus advi... 103 2e-20 AK154851_1(AK154851\|pid:none) Mus musculus NOD-derived CD11c +ve... 102 3e-20 BC129018_1(BC129018\|pid:none) Xenopus tropicalis supervillin, mR... 102 4e-20
protein update	2009. 5.30
PSORT	psg: 0.75 gvh: 0.41 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.94 mip: 0.16 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 76.0 %: mitochondrial 12.0 %: cytoplasmic 8.0 %: nuclear 4.0 %: cytoskeletal >> prediction for SHK802 is mit
5' end seq. ID	SHK802F
5' end seq.	>SHK802F.Seq AACAACAACAACAACAACAACAAGGTAGCGAATCACCAAATTCAACAACACCAAAATCAT CAACACCAACTCAAACTAGACATCATAGTGTATTATCAAGAAATCCATCATATACATCAT TGAAAAGTTCAGGTGGATTTTCAAAACCATCACCATCATCATCAACATCGACACCACCAT CAACATTTGCATCACCATTATCAATTGCTCAAACTTCATCAACCACCACTACCACTACTA CCACCACCACCACTACATCTTCTTCTTCAACACCACCACCATTAAGAGCAAACAATTCAA CATCATCAACTCCATTAAATTCAAGTACAGGTATTAAACAAAGTGATATTGTAATTGAAG GTAATTTAACAGAATTAATACCAGGTTTATTATGGAATTCAAATACAGAGAAATGGTATG TAGTTTCAGAGGGTATGCTTTATTCATACAAGAATAAATCATTGAAACAATTGGATCCAT TAGAGACTATTCATTTGGAGAAAGCAATCTCTGCACATAAAACCAAAGAAATTTTCACAA TTCAAGGTTTTAGTTTCCAATTGTCAACACCAAATCGTATCATTCATTTATTAGCAAAAA CCAAAGAAGAACGTGGATCATGGTTATCAGTATTACGTCAAAATCTAAANNNNNNNNNN
Length of 5' end seq.	659
3' end seq. ID	SHK802Z
3' end seq.	>SHK802Z.Seq NNNNNNNNNNTCTTAAAAGAAGGTAGTGAATCCAATGAATTTTGGTCAGCTTTTGAAAGT ACAGGTGGTAGACAAAAATACTTTAATGATATTATGATTCAAAGTAGTTCAATTCCAACC TCATTCACTTATAAACCACGTTTCTTTGTTTGTAGTAATGCATCGGGTATCGTTGAAGTT ACAGAGGAATCACCATTCTCTCAAGATGATCTAGATATTGGATCCGTTTGTATATTGGAT GTACAAAGTCATATTTACCTTTGGATTGGTAGTCGTGCAACTCATCGTACTAAACGTGCC TCTATGGAAGTTGTATTAAACTTTATTGAAACTTCAAAATTGGGTCATTCAAAAGAGCAC ACTAAAGTACTAATTGCAACTCCATTCGAAGAACCAATTGGTTTCAAAAGTTATTTCCGT GCTTGGTGTACCTCTAAATATCCAAAGAATAAATTACCTTTGGTTGAAAAAGATGGTATC CCAGTTGAACAAGTACTTAAAGATTATCTCAAAGAAATCTATACCTATGAAGAGTTATTG GCCGATCCATTACCTGCTGGCGTTGACTCTACTAAATTGGATACTTATCTCAATGATGAA GATTTTGAAAAAGTTTTCAAAATGACTAGAACTGAATGGTTAAAGATTCCAGCTTGGAAG AGAGAAGGTATTAAAAAAGAATTATTCTTATTTTAAATAATAAAAATAATCTCTATCTAT AATATACATTCATATAAATACCTATATACATATATTTAATACATATAAATTTACTATTTA AAA
Length of 3' end seq.	783
Connected seq. ID	SHK802P
Connected seq.	>SHK802P.Seq AACAACAACAACAACAACAACAAGGTAGCGAATCACCAAATTCAACAACACCAAAATCAT CAACACCAACTCAAACTAGACATCATAGTGTATTATCAAGAAATCCATCATATACATCAT TGAAAAGTTCAGGTGGATTTTCAAAACCATCACCATCATCATCAACATCGACACCACCAT CAACATTTGCATCACCATTATCAATTGCTCAAACTTCATCAACCACCACTACCACTACTA CCACCACCACCACTACATCTTCTTCTTCAACACCACCACCATTAAGAGCAAACAATTCAA CATCATCAACTCCATTAAATTCAAGTACAGGTATTAAACAAAGTGATATTGTAATTGAAG GTAATTTAACAGAATTAATACCAGGTTTATTATGGAATTCAAATACAGAGAAATGGTATG TAGTTTCAGAGGGTATGCTTTATTCATACAAGAATAAATCATTGAAACAATTGGATCCAT TAGAGACTATTCATTTGGAGAAAGCAATCTCTGCACATAAAACCAAAGAAATTTTCACAA TTCAAGGTTTTAGTTTCCAATTGTCAACACCAAATCGTATCATTCATTTATTAGCAAAAA CCAAAGAAGAACGTGGATCATGGTTATCAGTATTACGTCAAAATCTAAA----------T CTTAAAAGAAGGTAGTGAATCCAATGAATTTTGGTCAGCTTTTGAAAGTACAGGTGGTAG ACAAAAATACTTTAATGATATTATGATTCAAAGTAGTTCAATTCCAACCTCATTCACTTA TAAACCACGTTTCTTTGTTTGTAGTAATGCATCGGGTATCGTTGAAGTTACAGAGGAATC ACCATTCTCTCAAGATGATCTAGATATTGGATCCGTTTGTATATTGGATGTACAAAGTCA TATTTACCTTTGGATTGGTAGTCGTGCAACTCATCGTACTAAACGTGCCTCTATGGAAGT TGTATTAAACTTTATTGAAACTTCAAAATTGGGTCATTCAAAAGAGCACACTAAAGTACT AATTGCAACTCCATTCGAAGAACCAATTGGTTTCAAAAGTTATTTCCGTGCTTGGTGTAC CTCTAAATATCCAAAGAATAAATTACCTTTGGTTGAAAAAGATGGTATCCCAGTTGAACA AGTACTTAAAGATTATCTCAAAGAAATCTATACCTATGAAGAGTTATTGGCCGATCCATT ACCTGCTGGCGTTGACTCTACTAAATTGGATACTTATCTCAATGATGAAGATTTTGAAAA AGTTTTCAAAATGACTAGAACTGAATGGTTAAAGATTCCAGCTTGGAAGAGAGAAGGTAT TAAAAAAGAATTATTCTTATTTTAAATAATAAAAATAATCTCTATCTATAATATACATTC ATATAAATACCTATATACATATATTTAATACATATAAATTTACTATTTAAAA
Length of connected seq.	1422
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas