>SHK784 (SHK784Q) /CSM/SH/SHK7-D/SHK784Q.Seq.d/
XXXXXXXXXXACTATATGAAGNAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG
GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG
ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATT
GAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCT
GCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAAT
GAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAA
AATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTT
CAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAA
AGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGT
GATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAG
AATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAA
TTAAAAAATATTCAACATGAACAACAAATCCAAGAT

---YMKXIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIE
QAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKN
LQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSD
VEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQD

Frame A:
---lyexns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*
tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*k
fttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*
c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnpr


Frame B:
---YMKXIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIE
QAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKN
LQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSD
VEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQD


Frame C:
---i*xkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmpln
klniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqiki
ynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vm
lkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK784 (SHK784Q) /CSM/SH/SHK7-D/SHK784Q.Seq.d/                        745   0.0
SHK721 (SHK721Q) /CSM/SH/SHK7-A/SHK721Q.Seq.d/                        745   0.0
SHK538 (SHK538Q) /CSM/SH/SHK5-B/SHK538Q.Seq.d/                        745   0.0
SHJ765 (SHJ765Q) /CSM/SH/SHJ7-C/SHJ765Q.Seq.d/                        745   0.0
SHG286 (SHG286Q) /CSM/SH/SHG2-D/SHG286Q.Seq.d/                        745   0.0
CHR761 (CHR761Q) /CSM/CH/CHR7-C/CHR761Q.Seq.d/                        745   0.0
CHO677 (CHO677Q) /CSM/CH/CHO6-D/CHO677Q.Seq.d/                        745   0.0
CHM814 (CHM814Q) /CSM/CH/CHM8-A/CHM814Q.Seq.d/                        745   0.0
CHH410 (CHH410Q) /CSM/CH/CHH4-A/CHH410Q.Seq.d/                        745   0.0
CHG195 (CHG195Q) /CSM/CH/CHG1-D/CHG195Q.Seq.d/                        745   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   728   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.027  7
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X.    36   0.059  7
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   0.24   11
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.28   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.28   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.28   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.28   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.28   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   299   6e-80
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.33
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.43
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.56
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    36   0.95
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    36   0.95
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.2
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.6
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   1.6
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.6

 psg: 0.64  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHK784 is nuc

>SHK784Z.Seq
NNNNNNNNNNACTATATGAAGNAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAG
GCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAG
ATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATT
GAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCT
GCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAAT
GAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAA
AATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTT
CAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAA
AGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGT
GATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAG
AATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAA
TTAAAAAATATTCAACATGAACAACAAATCCAAGAT