SHK759
Library SH
(Link to library)
Clone ID SHK759
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16526-1
Original site URL
Representative seq. ID SHK759P
(Link to Original site)
Representative DNA sequence
>SHK759 (SHK759Q) /CSM/SH/SHK7-C/SHK759Q.Seq.d/
TTACCCCAAATGGTGATGCCACAAGAAGTGGTTCTGCTAGTGCCACTGTTACCATTGTAA
ATACTCCAGTAATTGATGTTATTATCTCACCATTACCAACAACCATTGATCCAACTCAAA
AATTGGTACTCTATACAGTAGTTAGTGGTAATGATGCATCTTCATCAAATTTAACCTATG
AATGGAATATGCTCGAAGGTACTCTTGAACTTCCATTAAAACAAGCCTATAGTACCCCAA
TGAATAGTAGAAATTTGGTATTAAAGGCTGGTGCACTCGGTTCAAAAGTTGTCTATAGAT
TTTCAGTAGATGTTAAAAATAAGAAAACTGGTGCCACTGGTAAAGCAATGGTAACATTCA
CCACTGAAGCAATCCCCCAAGGTGGTGATATCACTTGTTTAACAACAAGTGGTGATGTTA
CCGATACCTATTCAATTACAATGGGCGATCAATGGACTGATAATTCTGGTATTAAATCCT
ACAATTTCCGTTATCGTGTAGGTAGTGGCCCAGCAATCGCACTAAGTGAATCCTCCTCTG
ATAATTCTATCTCTACAATTCTTCCACCAGGTCAAATTACAATAATTGGTTATGTAACTT
CAAATGATGGTATCACTGCAAGTAAATCATGTAAAATTCAXXXXXXXXXXGATCTTCCAA
TACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATTCTTC
AAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTGAAAA
ATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCAACTC
CAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAATAATG
ATAACAGTAATACAACAACTACTACAACAACTACAACTACTACAACAATAAATGATAGAG
ATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAACTTA
AAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGATAATG
AAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAAGATA
ATGATCAACCACAAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAATGAAG
ATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGAAGATGTTGAAAATAAAGATG
AAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAAATTTTAAATAAAAATAAAAA
TAAAGAAATAATAAAAAAAATATTATTTTTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
TPNGDATRSGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSGNDASSSNLTYE
WNMLEGTLELPLKQAYSTPMNSRNLVLKAGALGSKVVYRFSVDVKNKKTGATGKAMVTFT
TEAIPQGGDITCLTTSGDVTDTYSITMGDQWTDNSGIKSYNFRYRVGSGPAIALSESSSD
NSISTILPPGQITIIGYVTSNDGITASKSCKI---

---DLPIPKNKKDKSFGDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNV
SSTTSTPITSTIQPVIDESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNY
CSIKQLKKEAEVEELLENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNE
QIESNEDIENKDEDVENKDEDVENKDEDEEDQIEN*iykkf*ikikikk**kkyyff


Translated Amino Acid sequence (All Frames)
Frame A:
lpqmvmpqevvllvpllpl*ilq*lmllshhyqqpliqlknwysiq*lvvmmhlhqi*pm
ngicskvllnfh*nkpivpq*iveiwy*rlvhsvqklsidfq*mlkirklvplvkqw*hs
plkqspkvvislv*qqvvmlpipiqlqwaingliilvlnptisviv*vvaqqsh*vnppl
iilslqffhqvklq*lvm*lqmmvslqvnhvkf---

---DLPIPKNKKDKSFGDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNV
SSTTSTPITSTIQPVIDESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNY
CSIKQLKKEAEVEELLENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNE
QIESNEDIENKDEDVENKDEDVENKDEDEEDQIEN*iykkf*ikikikk**kkyyff

Frame B:
ypkw*chkkwfc*chcyhckyssn*cyyltitnnh*snskigtlyss*w**cifikfnl*
meyarrys*tsiktsl*ypne**kfgikgwctrfkscl*ifsrc*k*enwchw*sngnih
h*snpprw*yhlfnnkw*cyrylfnyngrsmd**fwy*ilqfplscr*wpsnrtk*ill*
*fylynsstrsnynnwlcnfk*wyhck*im*ns---

---ifqyqrikkinplvmkmmfniffkslkisllklkrennlns*kiinqfhl*lqlvmy
qvqlqlq*llqfnqllmnlqvviiimitviqqllqqlqllqq*mieikqprqfkrhgkii
vvsnnlkkklklknylkilvncylimkeihlkiikh*ilksmmmkiminhktitimnqtn
klnqmkilkikmkmlkikmkmlkikmkmkkikskikyiknfk*k*k*rnnkkniifl

Frame C:
TPNGDATRSGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSGNDASSSNLTYE
WNMLEGTLELPLKQAYSTPMNSRNLVLKAGALGSKVVYRFSVDVKNKKTGATGKAMVTFT
TEAIPQGGDITCLTTSGDVTDTYSITMGDQWTDNSGIKSYNFRYRVGSGPAIALSESSSD
NSISTILPPGQITIIGYVTSNDGITASKSCKI---

---ssntke*kr*ilw**k*csiyssrv*rylc*s*kertt*tleksstnftcnfnw*ci
kynfnsnnfynstsy**ifk*******q*ynnyynnynyynnk**r*ssqdnskgmekll
*yqtt*krs*s*rit*kyw*ivi***krsi*klsnirysnr***r**sttrr*q**ikrt
n*ik*ry*k*r*rc*k*r*rc*k*r*r*rrsnrklni*kilnknknkeiikkilff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK759 (SHK759Q) /CSM/SH/SHK7-C/SHK759Q.Seq.d/ 1744 0.0
CFG369 (CFG369Q) /CSM/CF/CFG3-C/CFG369Q.Seq.d/ 1150 0.0
CFJ665 (CFJ665Q) /CSM/CF/CFJ6-C/CFJ665Q.Seq.d/ 1140 0.0
CHP467 (CHP467Q) /CSM/CH/CHP4-C/CHP467Q.Seq.d/ 1019 0.0
CFI845 (CFI845Q) /CSM/CF/CFI8-B/CFI845Q.Seq.d/ 1013 0.0
CHM830 (CHM830Q) /CSM/CH/CHM8-B/CHM830Q.Seq.d/ 1011 0.0
AFK510 (AFK510Q) /CSM/AF/AFK5-A/AFK510Q.Seq.d/ 995 0.0
CHJ368 (CHJ368Q) /CSM/CH/CHJ3-C/CHJ368Q.Seq.d/ 985 0.0
SHA861 (SHA861Q) /CSM/SH/SHA8-C/SHA861Q.Seq.d/ 940 0.0
CHG590 (CHG590Q) /CSM/CH/CHG5-D/CHG590Q.Seq.d/ 920 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U82511|U82511.1 Dictyostelium discoideum random slug cDNA19 protein (rsc19) mRNA, partial cds. 531 0.0 2
CN776119|CN776119.1 tae77f02.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.001 3
CN772051|CN772051.1 tad94f12.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.001 3
AZ240389|AZ240389.1 RPCI-23-89E14.TV RPCI-23 Mus musculus genomic clone RPCI-23-89E14, genomic survey sequence. 36 0.006 3
CN775673|CN775673.1 tae84a06.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.011 2
AZ188093|AZ188093.1 SP_1011_B1_A04_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=1011 Col=7 Row=B, DNA sequence. 42 0.017 3
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 42 0.017 9
CN775839|CN775839.1 tae78a10.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3', mRNA sequence. 40 0.021 3
CN776161|CN776161.1 tae78a10.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.022 2
CN624142|CN624142.1 tae59h05.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.027 2
dna update 2006. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001327_669(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 55 6e-06
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote... 40 0.19
CP000681_1681(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 39 0.54
BX294134_147(BX294134|pid:none) Rhodopirellula baltica SH 1 comp... 39 0.54
AP007255_1139(AP007255|pid:none) Magnetospirillum magneticum AMB... 39 0.54
CP000503_2304(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 38 0.71
AB110082_1(AB110082|pid:none) Bacillus ehimensis gene for chitin... 38 0.71
CP000685_2617(CP000685|pid:none) Flavobacterium johnsoniae UW101... 38 0.71
CP000685_1225(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 1.2
CP000009_1308(CP000009|pid:none) Gluconobacter oxydans 621H, com... 37 1.6
protein update 2009. 5.30
PSORT

psg: 0.90 gvh: 0.46 alm: 0.36 top: 0.60 tms: 0.00 mit: 0.30 mip: 0.03
nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SHK759 is cyt

5' end seq. ID SHK759F
5' end seq.
>SHK759F.Seq
TTACCCCAAATGGTGATGCCACAAGAAGTGGTTCTGCTAGTGCCACTGTTACCATTGTAA
ATACTCCAGTAATTGATGTTATTATCTCACCATTACCAACAACCATTGATCCAACTCAAA
AATTGGTACTCTATACAGTAGTTAGTGGTAATGATGCATCTTCATCAAATTTAACCTATG
AATGGAATATGCTCGAAGGTACTCTTGAACTTCCATTAAAACAAGCCTATAGTACCCCAA
TGAATAGTAGAAATTTGGTATTAAAGGCTGGTGCACTCGGTTCAAAAGTTGTCTATAGAT
TTTCAGTAGATGTTAAAAATAAGAAAACTGGTGCCACTGGTAAAGCAATGGTAACATTCA
CCACTGAAGCAATCCCCCAAGGTGGTGATATCACTTGTTTAACAACAAGTGGTGATGTTA
CCGATACCTATTCAATTACAATGGGCGATCAATGGACTGATAATTCTGGTATTAAATCCT
ACAATTTCCGTTATCGTGTAGGTAGTGGCCCAGCAATCGCACTAAGTGAATCCTCCTCTG
ATAATTCTATCTCTACAATTCTTCCACCAGGTCAAATTACAATAATTGGTTATGTAACTT
CAAATGATGGTATCACTGCAAGTAAATCATGTAAAATTCANNNNNNNNNN
Length of 5' end seq. 650
3' end seq. ID SHK759Z
3' end seq.
>SHK759Z.Seq
NNNNNNNNNNGATCTTCCAATACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAA
TGATGTTCAATATATTCTTCAAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGA
ACAACTTAAACTCTTGAAAAATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGT
ATCAAGTACAACTTCAACTCCAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTC
AAGTAGTAATAATAATAATGATAACAGTAATACAACAACTACTACAACAACTACAACTAC
TACAACAATAAATGATAGAGATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTA
TTGTAGTATCAAACAACTTAAAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGG
TGAATTGTTATCTGATAATGAAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCA
AATCGATGATGATGAAGATAATGATCAACCACAAGACGATAACAATAATGAATCAAACGA
ACAAATTGAATCAAATGAAGATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGA
AGATGTTGAAAATAAAGATGAAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAA
ATTTTAAATAAAAATAAAAATAAAGAAATAATAAAAAAAATATTATTTTTTTA
Length of 3' end seq. 713
Connected seq. ID SHK759P
Connected seq.
>SHK759P.Seq
TTACCCCAAATGGTGATGCCACAAGAAGTGGTTCTGCTAGTGCCACTGTTACCATTGTAA
ATACTCCAGTAATTGATGTTATTATCTCACCATTACCAACAACCATTGATCCAACTCAAA
AATTGGTACTCTATACAGTAGTTAGTGGTAATGATGCATCTTCATCAAATTTAACCTATG
AATGGAATATGCTCGAAGGTACTCTTGAACTTCCATTAAAACAAGCCTATAGTACCCCAA
TGAATAGTAGAAATTTGGTATTAAAGGCTGGTGCACTCGGTTCAAAAGTTGTCTATAGAT
TTTCAGTAGATGTTAAAAATAAGAAAACTGGTGCCACTGGTAAAGCAATGGTAACATTCA
CCACTGAAGCAATCCCCCAAGGTGGTGATATCACTTGTTTAACAACAAGTGGTGATGTTA
CCGATACCTATTCAATTACAATGGGCGATCAATGGACTGATAATTCTGGTATTAAATCCT
ACAATTTCCGTTATCGTGTAGGTAGTGGCCCAGCAATCGCACTAAGTGAATCCTCCTCTG
ATAATTCTATCTCTACAATTCTTCCACCAGGTCAAATTACAATAATTGGTTATGTAACTT
CAAATGATGGTATCACTGCAAGTAAATCATGTAAAATTCA----------GATCTTCCAA
TACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATTCTTC
AAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTGAAAA
ATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCAACTC
CAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAATAATG
ATAACAGTAATACAACAACTACTACAACAACTACAACTACTACAACAATAAATGATAGAG
ATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAACTTA
AAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGATAATG
AAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAAGATA
ATGATCAACCACAAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAATGAAG
ATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGAAGATGTTGAAAATAAAGATG
AAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAAATTTTAAATAAAAATAAAAA
TAAAGAAATAATAAAAAAAATATTATTTTTTTA
Length of connected seq. 1343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -