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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK754
Library SH
(Link to library)
Clone ID SHK754
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16328-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHK754 (SHK754Q) /CSM/SH/SHK7-C/SHK754Q.Seq.d/
XXXXXXXXXXGTATNNCCAGGTGATACTATNCAAGATATTTTACGTATTATTATTCGTGA
TGAGAAAGTTTACGAAGGGTGATATNAACAAGACTATCAGGTCGTAAAAATCATCAAGAG
AAAACTGTTTATGAAGGTGATATCAAACAAGACTTATTACGTCGTAAAAATCTTGATAAA
CCTGATTCAAAACAAGTATATCCAGGTGATGTTATTCAAGATATTTTACGTGTTATTAAT
CGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTATTACATCGTAATAAC
AAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAGATTTATTACGTCGT
AATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTATTCAAGATATTTTA
CGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGGTGATATTAAACAAAATTTGTTG
CGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTGATATTAAACAAGAT
TTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATGAAGGTGACATTAAA
CAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAGTATATCAAGGTGAT
ATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAGTAAATGAGGATGAA
ATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAGAGGCTTCTGAAGAC
TTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCATTTGTTGAACAACAT
CCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAGACAATAAATTACTATCAAT
AAAAANATTATTAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---xxr*yyxryftyyys**ESLRRVIXTRLSGRKNHQEKTVYEGDIKQDLLRRKNLDKP
DSKQVYPGDVIQDILRVINRDEKEVYEGDIKQDLLHRNNKNRQEKPVYEGDIKQDLLRRN
NKNHQEEQVYQGDIIQDILRVLNHEEKEVYEGDIKQNLLRRKNHDHPEKEIYEGDIKQDL
LRRNNKNHQEKLVYEGDIKQDLLRRNNKNHKEEQVYQGDIIQDILRVLNHGEKEVNEDEI
EKDLMQRKNHHQEEEASEDLEEEIGKLWNKQSQAFVEQHPNQHNNQKTIHLSRQ*itink
xii
Translated Amino Acid sequence (All Frames) 
Frame A:
---yxqvilxkifyvllfvmrkftkgdxnktirs*kssrencl*r*yqtrlits*ks**t
*fktsisr*cysryftcy*s**krsl*r*y*trlits**qkssretsi*r*h*trfits*
*qkssrrtsisr*yysryftcfks*rerslrr*y*tkfvaskks*ssrkrnl*r*y*trf
its**qkpsretcl*r*h*trfits**qks*rrtsisr*yysryftcfkswrkrsk*g*n
*krfdat*kspsrrrgf*rlgrrnwktle*tkssic*ttskptqqsknnslvktinyyq*
kxyy


Frame B:
---xxr*yyxryftyyys**ESLRRVIXTRLSGRKNHQEKTVYEGDIKQDLLRRKNLDKP
DSKQVYPGDVIQDILRVINRDEKEVYEGDIKQDLLHRNNKNRQEKPVYEGDIKQDLLRRN
NKNHQEEQVYQGDIIQDILRVLNHEEKEVYEGDIKQNLLRRKNHDHPEKEIYEGDIKQDL
LRRNNKNHQEKLVYEGDIKQDLLRRNNKNHKEEQVYQGDIIQDILRVLNHGEKEVNEDEI
EKDLMQRKNHHQEEEASEDLEEEIGKLWNKQSQAFVEQHPNQHNNQKTIHLSRQ*itink
xii


Frame C:
---xpgdtxqdilriiirdekvyeg*yxqdyqvvkiikrklfmkvisnktyyvvkilinl
iqnkyiqvmlfkifyvllivmkkkfmkvilnktyyivitkivkrnqymkvtlnkiyyvvi
tkiikknkyikvilfkifyvf*imkrkkftkvilnkiccvekimiiqkkkfmkvilnkiy
yvvitktikrnlfmkvtlnkiyyvvitkiikknkyikvilfkifyvf*imekkk*mrmkl
kki*cnvkitikkkrllktwkkklenfginkvkhllnniqtnttikkqftcqdnkllsik
xll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK754 (SHK754Q) /CSM/SH/SHK7-C/SHK754Q.Seq.d/                       1740   0.0
AHL622 (AHL622Q) /CSM/AH/AHL6-A/AHL622Q.Seq.d/                       1697   0.0
CHF220 (CHF220Q) /CSM/CH/CHF2-A/CHF220Q.Seq.d/                       1661   0.0
CHQ744 (CHQ744Q) /CSM/CH/CHQ7-B/CHQ744Q.Seq.d/                       1657   0.0
SHL162 (SHL162Q) /CSM/SH/SHL1-C/SHL162Q.Seq.d/                       1655   0.0
AHL271 (AHL271Q) /CSM/AH/AHL2-C/AHL271Q.Seq.d/                       1655   0.0
SHL617 (SHL617Q) /CSM/SH/SHL6-A/SHL617Q.Seq.d/                       1653   0.0
CHI693 (CHI693Q) /CSM/CH/CHI6-D/CHI693Q.Seq.d/                       1653   0.0
SHC143 (SHC143Q) /CSM/SH/SHC1-B/SHC143Q.Seq.d/                       1649   0.0
CHI365 (CHI365Q) /CSM/CH/CHI3-C/CHI365Q.Seq.d/                       1641   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds.   846   0.0    4
CG244978|CG244978.1 OGWLN35TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0611F22, genomic survey sequence.    32   0.025  4
AC142396|AC142396.25 Medicago truncatula clone mth2-6g9, complete sequence.    36   0.16   6
CK632901|CK632901.1 AM2-AP0010-131201-021-D01 AP0010 Apis mellifera cDNA, mRNA sequence.    48   0.37   1
CB932759|CB932759.1 rj06h05.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5', mRNA sequence.    42   0.79   2
AC177191|AC177191.1 Strongylocentrotus purpuratus clone R3-4018J6, WORKING DRAFT SEQUENCE, 18 unordered pieces.    40   0.84   5
AF134577|AF134577.1 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds.    42   0.94   3
AY714214|AY714214.1 Campylobacter jejuni strain 81-176 plasmid pTet, complete sequence.    30   1.1    8
CN952096| membrane protein, putative [Wolbachia endosymbiont of Drosophila. Score = 34.3 bits (77), Expect = 2.0, mRNA sequence.    30   1.2    3
EC323760|EC323760.1 EMBRYOF091721H18 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061024706569, mRNA sequence.    46   1.5    1
dna update 2006. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_148(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    63   1e-08
(Q9MTL3) RecName: Full=Acetyl-coenzyme A carboxylase carboxyl tr...    60   1e-07
AF056936_1(AF056936|pid:none) Plasmodium falciparum mature paras...    51   5e-05
AM180355_2790(AM180355|pid:none) Clostridium difficile 630 compl...    50   1e-04
AL844501_130(AL844501|pid:none) Plasmodium falciparum strain 3D7...    49   2e-04
AL031744_5(AL031744|pid:none) Plasmodium falciparum DNA from MAL...    49   2e-04
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr...    49   3e-04
EU262889_31(EU262889|pid:none) Oenothera biennis chloroplast, co...    48   4e-04
AL844506_176(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    48   4e-04
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    48   5e-04
protein update 2009. 5.30
PSORT 

 psg: 0.46  gvh: 0.26  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic

>> prediction for SHK754 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHK754Z
3' end seq. 
>SHK754Z.Seq
NNNNNNNNNNGTATNNCCAGGTGATACTATNCAAGATATTTTACGTATTATTATTCGTGA
TGAGAAAGTTTACGAAGGGTGATATNAACAAGACTATCAGGTCGTAAAAATCATCAAGAG
AAAACTGTTTATGAAGGTGATATCAAACAAGACTTATTACGTCGTAAAAATCTTGATAAA
CCTGATTCAAAACAAGTATATCCAGGTGATGTTATTCAAGATATTTTACGTGTTATTAAT
CGTGATGAAAAAGAAGTTTATGAAGGTGATATTAAACAAGACTTATTACATCGTAATAAC
AAAAATCGTCAAGAGAAACCAGTATATGAAGGTGACATTAAACAAGATTTATTACGTCGT
AATAACAAAAATCATCAAGAAGAACAAGTATATCAAGGTGATATTATTCAAGATATTTTA
CGTGTTTTAAATCATGAAGAGAAAGAAGTTTACGAAGGTGATATTAAACAAAATTTGTTG
CGTCGAAAAAATCATGATCATCCAGAAAAAGAAATTTATGAAGGTGATATTAAACAAGAT
TTATTACGTCGTAATAACAAAAACCATCAAGAGAAACTTGTTTATGAAGGTGACATTAAA
CAAGATTTATTACGTCGTAATAACAAAAATCATAAAGAAGAACAAGTATATCAAGGTGAT
ATTATTCAAGATATTTTACGTGTTTTAAATCATGGAGAAAAAGAAGTAAATGAGGATGAA
ATTGAAAAAGATTTGATGCAACGTAAAAATCACCATCAAGAAGAAGAGGCTTCTGAAGAC
TTGGAAGAAGAAATTGGAAAACTTTGGAATAAACAAAGTCAAGCATTTGTTGAACAACAT
CCAAACCAACACAACAATCAAAAAACAATTCACTTGTCAAGACAATAAATTACTATCAAT
AAAAANATTATTAT
Length of 3' end seq. 914
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -