>SHK664 (SHK664Q) /CSM/SH/SHK6-C/SHK664Q.Seq.d/
ATATAGTGGAGATAATTCACCAACTCTATCACGTAATCATCATGACGAAATAGGGCACCT
TCAATATACAGCCAATCATCATATAGCAACTAGTCATCATAGTCATAGTCATAACCATAA
TCATAATCACAATCATCAATTAACACAACCAATTCAACAACAACAACAAACACAACATGT
AAATTTAGCATCAAACAATTATTATATAAGACATATTTATACAAACAATCAATATGATGA
AACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCACGTAA
AATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCAATAAT
CATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTATTTCG
TATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGTGAAGA
TGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTCTTTAG
AGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTCATTGA
TGAAXXXXXXXXXXCAANCCACTNCAACTACAACTACATCAAGTGGTAGTAATAGATTCT
CTTCAAATAGATATAAACCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTATTCAC
GTGAAATTTATGATGATGATTATTATTCAAATAATAATTTAATGATGTTTGGTAATGAGC
AACCAAATCAAACACCAATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAGATCTC
AAAGTTGCTTTGAACCAGAGAATCTTGTATTGCTACAACAACAATATCAACAATATCAAC
AACAACAACAACAACAACAACAAATTCCATTCCAAGCAAATCCACAAATATAGTAATGCT
GTTATTGAACAAAAATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAAC
CGAGTCTCTAGAGATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTT
CAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTA
CGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTAT
TTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACT
AGATCAAGATCACCAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGT
TCTTCAAGTTCTGCTTATAACAATAATAATAATAATAATAATGTACCAAAATAATTAATT
TTTAAAAAATTAAATAAATTAAAAAATTAATAAAT

YSGDNSPTLSRNHHDEIGHLQYTANHHIATSHHSHSHNHNHNHNHQLTQPIQQQQQTQHV
NLASNNYYIRHIYTNNQYDETTQIVMNNGIPFIYNPNARKIFGVPLTQVPCRAGSNVPII
IEKLIDHIERTSLNSEGLFRIPGVDLTINQYIKLFDNGEDVDVSPIEPYTAAGLLKRFFR
DLPVFVPQSINKRVVSLFIDE---

---QXTXTTTTSSGSNRFSSNRYKPVDLTQSSSNFRYSREIYDDDYYSNNNLMMFGNEQP
NQTPISVSSSSAFTRQRSQSCFEPENLVLLQQQYQQYQQQQQQQQQIPFQANPQI**ccy
*tkigsn*ryh**ft*r*psl*rlysls*rg*rlkiitskrnrclk*ihqky*igr*it*
rgrkeskin*rdsft*nlfhlkrkiksktfinh*rsfn*ikitnftkfy*yvnlifr*ff
kfcl*q******ctkiinf*kik*ikklin

Frame A:
i*wr*ftnsit*ss*rnrapsiysqssysn*ss*s*s*p*s*sqssinttnsttttnttc
kfsikqllyktylykqsi**nntnrye*wytiyi*skct*niwstidsgtm*sgfkctnn
hrkth*syreniiefrgfisytrcgfnnqsiyktir*w*rc*clshrtlyscrsiekil*
rftcirttinq*tcgiiih**---

---QXTXTTTTSSGSNRFSSNRYKPVDLTQSSSNFRYSREIYDDDYYSNNNLMMFGNEQP
NQTPISVSSSSAFTRQRSQSCFEPENLVLLQQQYQQYQQQQQQQQQIPFQANPQI**ccy
*tkigsn*ryh**ft*r*psl*rlysls*rg*rlkiitskrnrclk*ihqky*igr*it*
rgrkeskin*rdsft*nlfhlkrkiksktfinh*rsfn*ikitnftkfy*yvnlifr*ff
kfcl*q******ctkiinf*kik*ikklin

Frame B:
YSGDNSPTLSRNHHDEIGHLQYTANHHIATSHHSHSHNHNHNHNHQLTQPIQQQQQTQHV
NLASNNYYIRHIYTNNQYDETTQIVMNNGIPFIYNPNARKIFGVPLTQVPCRAGSNVPII
IEKLIDHIERTSLNSEGLFRIPGVDLTINQYIKLFDNGEDVDVSPIEPYTAAGLLKRFFR
DLPVFVPQSINKRVVSLFIDE---

---xplqlqlhqvvvidslqidinqlilhnhlqtfvihvkfmmmiiiqiii**clvmsnq
ikhqflyhlhlhshvkdlkvalnqrilycynnninninnnnnnnnkfhskqihkysnavi
eqkldqirdtinnlhrdnrvsrdythylrevedlrsslqketvvsnefiknieledklrr
eeeknqrlieeihlletyfilkekskakrlsttkdlltrsrsptlpssinmstsslgsss
ssaynnnnnnnnvpk*lifkklnklkn**

Frame C:
iveiihqlyhviimtk*gtfniqpiii*qlviivivitiiiitiin*hnqfnnnnkhnm*
i*hqtiii*difiqtinmmkqhksl*imvyhlyiiqmhvkyleyh*lryhvervqmyq*s
sknslii*rehh*iprvyfvypvwi*qsini*nysimvkmlmslp*npiqlqvy*kdsle
iylysyhnqsinvwyhyslm---

---xhxnynyikw***ilfk*i*ts*sytiifklslft*nl***llfk**fndvw**atk
sntnfciificihtskiskll*tresciatttististtttttttnsipskstnivmlll
nknwikleipliiyieitesleiiliilerlkt*dhhfkkkplsqmnsskilnwkinyve
rkkrikd*lkrfiylkpiss*kknqkqnvyqplkif*ldqdhqlyqvllicqphl*vvlq
vllitiiiiiimyqnn*flkn*in*kink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK664 (SHK664Q) /CSM/SH/SHK6-C/SHK664Q.Seq.d/                       1310   0.0
AHC377 (AHC377Q) /CSM/AH/AHC3-D/AHC377Q.Seq.d/                        846   0.0
AHQ488 (AHQ488Q) /CSM/AH/AHQ4-D/AHQ488Q.Seq.d/                        844   0.0
VHQ354 (VHQ354Q) /CSM/VH/VHQ3-C/VHQ354Q.Seq.d/                        829   0.0
AHI871 (AHI871Q) /CSM/AH/AHI8-C/AHI871Q.Seq.d/                        829   0.0
AHF171 (AHF171Q) /CSM/AH/AHF1-C/AHF171Q.Seq.d/                        829   0.0
AFF818 (AFF818Q) /CSM/AF/AFF8-A/AFF818Q.Seq.d/                        825   0.0
VSH614 (VSH614Q) /CSM/VS/VSH6-A/VSH614Q.Seq.d/                        813   0.0
SHA507 (SHA507Q) /CSM/SH/SHA5-A/SHA507Q.Seq.d/                        813   0.0
AHF865 (AHF865Q) /CSM/AH/AHF8-C/AHF865Q.Seq.d/                        813   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF474341|AF474341.1 Dictyostelium discoideum ABC transporter ABCC.9 (abcC9) gene, complete cds.   846   0.0    2
AF081586|AF081586.1 Dictyostelium discoideum developmental protein DG1094 (DG1094) gene, partial cds.   504   0.0    3
AG403889|AG403889.1 Mus musculus molossinus DNA, clone:MSMg01-261I10.TJ, genomic survey sequence.    58   6e-04  1
AG359323|AG359323.1 Mus musculus molossinus DNA, clone:MSMg01-159F22.TJ, genomic survey sequence.    58   6e-04  1
CT476834|CT476834.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH507-535F5.    50   0.021  4
DV209480|DV209480.1 0089P0128Z_A02_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0128Z_A02 5', mRNA sequence.    52   0.037  1
DV205845|DV205845.1 0089P0071Z_D07_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0071Z_D07 5', mRNA sequence.    52   0.037  1
CV521814|CV521814.1 0089P0065Z_H01_T7 Mimulus guttatus library 2 Mimulus guttatus cDNA clone 0089P0065Z_H01, mRNA sequence.    52   0.037  1
CG748246|CG748246.1 P042-1-D01.za Ppa EcoRI BAC Library Pristionchus pacificus genomic, genomic survey sequence.    52   0.037  1
CG751785|CG751785.1 P046-2-C07.ya Ppa EcoRI BAC Library Pristionchus pacificus genomic, genomic survey sequence.    52   0.037  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF081586_1(AF081586|pid:none) Dictyostelium discoideum developme...   172   8e-53
(Q15311) RecName: Full=RalA-binding protein 1;          Short=Ra...    68   7e-10
(Q9PT60) RecName: Full=RalA-binding protein 1-A;          Short=...    67   2e-09
BC070617_1(BC070617|pid:none) Xenopus laevis hypothetical protei...    67   2e-09
AJ252165_1(AJ252165|pid:none) Xenopus laevis partial mRNA for Ra...    67   2e-09
AJ304845_1(AJ304845|pid:none) Xenopus laevis partial mRNA for Ra...    65   6e-09
BC145320_1(BC145320|pid:none) Mus musculus ralA binding protein ...    64   1e-08
AP007167_104(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...    64   1e-08
BC089788_1(BC089788|pid:none) Rattus norvegicus ralA binding pro...    63   3e-08
U82623_1(U82623|pid:none) Rattus norvegicus cytocentrin mRNA, co...    63   3e-08

 psg: 0.47  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHK664 is nuc

>SHK664F.Seq
ATATAGTGGAGATAATTCACCAACTCTATCACGTAATCATCATGACGAAATAGGGCACCT
TCAATATACAGCCAATCATCATATAGCAACTAGTCATCATAGTCATAGTCATAACCATAA
TCATAATCACAATCATCAATTAACACAACCAATTCAACAACAACAACAAACACAACATGT
AAATTTAGCATCAAACAATTATTATATAAGACATATTTATACAAACAATCAATATGATGA
AACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCACGTAA
AATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCAATAAT
CATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTATTTCG
TATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGTGAAGA
TGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTCTTTAG
AGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTCATTGA
TGAANNNNNNNNNN

>SHK664Z.Seq
NNNNNNNNNNCAANCCACTNCAACTACAACTACATCAAGTGGTAGTAATAGATTCTCTTC
AAATAGATATAAACCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTATTCACGTGA
AATTTATGATGATGATTATTATTCAAATAATAATTTAATGATGTTTGGTAATGAGCAACC
AAATCAAACACCAATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAGATCTCAAAG
TTGCTTTGAACCAGAGAATCTTGTATTGCTACAACAACAATATCAACAATATCAACAACA
ACAACAACAACAACAACAAATTCCATTCCAAGCAAATCCACAAATATAGTAATGCTGTTA
TTGAACAAAAATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAACCGAG
TCTCTAGAGATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTTCAAA
AAGAAACCGTTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTACGTA
GAGAGGAAGAAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTATTTCA
TCTTAAAAGAAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACTAGAT
CAAGATCACCAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGTTCTT
CAAGTTCTGCTTATAACAATAATAATAATAATAATAATGTACCAAAATAATTAATTTTTA
AAAAATTAAATAAATTAAAAAATTAATAAAT

>SHK664P.Seq
ATATAGTGGAGATAATTCACCAACTCTATCACGTAATCATCATGACGAAATAGGGCACCT
TCAATATACAGCCAATCATCATATAGCAACTAGTCATCATAGTCATAGTCATAACCATAA
TCATAATCACAATCATCAATTAACACAACCAATTCAACAACAACAACAAACACAACATGT
AAATTTAGCATCAAACAATTATTATATAAGACATATTTATACAAACAATCAATATGATGA
AACAACACAAATCGTTATGAATAATGGTATACCATTTATATATAATCCAAATGCACGTAA
AATATTTGGAGTACCATTGACTCAGGTACCATGTAGAGCGGGTTCAAATGTACCAATAAT
CATCGAAAAACTCATTGATCATATAGAGAGAACATCATTGAATTCCGAGGGTTTATTTCG
TATACCCGGTGTGGATTTAACAATCAATCAATATATAAAACTATTCGATAATGGTGAAGA
TGTTGATGTCTCTCCCATAGAACCCTATACAGCTGCAGGTCTATTGAAAAGATTCTTTAG
AGATTTACCTGTATTCGTACCACAATCAATCAATAAACGTGTGGTATCATTATTCATTGA
TGAA----------CAANCCACTNCAACTACAACTACATCAAGTGGTAGTAATAGATTCT
CTTCAAATAGATATAAACCAGTTGATCTTACACAATCATCTTCAAACTTTCGTTATTCAC
GTGAAATTTATGATGATGATTATTATTCAAATAATAATTTAATGATGTTTGGTAATGAGC
AACCAAATCAAACACCAATTTCTGTATCATCTTCATCTGCATTCACACGTCAAAGATCTC
AAAGTTGCTTTGAACCAGAGAATCTTGTATTGCTACAACAACAATATCAACAATATCAAC
AACAACAACAACAACAACAACAAATTCCATTCCAAGCAAATCCACAAATATAGTAATGCT
GTTATTGAACAAAAATTGGATCAAATTAGAGATACCATTAATAATTTACATAGAGATAAC
CGAGTCTCTAGAGATTATACTCATTATCTTAGAGAGGTTGAAGACTTAAGATCATCACTT
CAAAAAGAAACCGTTGTCTCAAATGAATTCATCAAAAATATTGAATTGGAAGATAAATTA
CGTAGAGAGGAAGAAAAGAATCAAAGATTAATTGAAGAGATTCATTTACTTGAAACCTAT
TTCATCTTAAAAGAAAAATCAAAAGCAAAACGTTTATCAACCACTAAAGATCTTTTAACT
AGATCAAGATCACCAACTTTACCAAGTTCTATTAATATGTCAACCTCATCTTTAGGTAGT
TCTTCAAGTTCTGCTTATAACAATAATAATAATAATAATAATGTACCAAAATAATTAATT
TTTAAAAAATTAAATAAATTAAAAAATTAATAAAT