>SHK647 (SHK647Q) /CSM/SH/SHK6-B/SHK647Q.Seq.d/
XXXXXXXXXXTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATT
GGTGCCATCATCTTGGCTTTGNATGNTGATTTCGAACCTTACTTTTCAAATTTCNTTCCA
ATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGT
ATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATC
GTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGT
GCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTT
CCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTT
TTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAG
AGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTA
CTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTT
GGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATT
AGAGAATTTGTAA

---FKNQSIIIYEEALLAIGAIILALXXDFEPYFSNFXPILVNFLKNVDFGSVTNIAIGI
VGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLP
MVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVL
INDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFV

Frame A:
---iqesinhhlrrgspchwchhlgfxx*frtllfkfxsnpcklpqecrfwfrnkhcnwy
rw*fsscfw*eilwclr*nrsidr**shqsktlyec*tkcyqlsl*yrh*cwcrfhsfps
ngyansssslyh*nr**rlfk*tp*nylpnlhwyhsrsqe**snrrtqsihqsnvrlcct
yk**srtl*fcyfcclgltw*fsssyg**y*ksfkqqnn*ric


Frame B:
---FKNQSIIIYEEALLAIGAIILALXXDFEPYFSNFXPILVNFLKNVDFGSVTNIAIGI
VGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAKPSAISCLCDIAISVGADFIPFLP
MVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVL
INDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNKIIREFV


Frame C:
---srinqssstkrlslplvpsswlxmxisnltfqisfqsl*tssrmsilvp*qtlqlvs
lvi*lvllvrnslvfalksfh*slvispiqnsl*mlnqvlsvvsvisplvlvpisflsfq
wlcqffikplplksmmktf*mnsvklsskltlvsfkvsrviiksknsintsiqc*tllyl
*mmiqnvmilllllpwpylvi*lklwvivleif*ttk*lenl*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ406 (VHQ406Q) /CSM/VH/VHQ4-A/VHQ406Q.Seq.d/                       1296   0.0
VHQ201 (VHQ201Q) /CSM/VH/VHQ2-A/VHQ201Q.Seq.d/                       1296   0.0
VHP826 (VHP826Q) /CSM/VH/VHP8-B/VHP826Q.Seq.d/                       1296   0.0
VHP718 (VHP718Q) /CSM/VH/VHP7-A/VHP718Q.Seq.d/                       1296   0.0
VHP288 (VHP288Q) /CSM/VH/VHP2-D/VHP288Q.Seq.d/                       1296   0.0
VHP264 (VHP264Q) /CSM/VH/VHP2-C/VHP264Q.Seq.d/                       1296   0.0
VHP188 (VHP188Q) /CSM/VH/VHP1-D/VHP188Q.Seq.d/                       1296   0.0
VHO468 (VHO468Q) /CSM/VH/VHO4-C/VHO468Q.Seq.d/                       1296   0.0
VHN621 (VHN621Q) /CSM/VH/VHN6-A/VHN621Q.Seq.d/                       1296   0.0
VHN437 (VHN437Q) /CSM/VH/VHN4-B/VHN437Q.Seq.d/                       1296   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC183443|AC183443.2 Echinops telfairi clone CH238-96N19, WORKING DRAFT SEQUENCE, 7 ordered pieces.    48   0.27   1
CV748470|CV748470.1 SJL_35_004__5-4__08.T7_012.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.1    1
CV741544|CV741544.1 SJAL_033_76.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.1    1
CV740288|CV740288.1 SJAL_026_17.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.1    1
CV737780|CV737780.1 SJAL_010_44.T7 SJL Schistosoma japonicum cDNA, mRNA sequence.    46   1.1    1
BU802954|BU802954.1 SJFAPE03 SJF Schistosoma japonicum cDNA, mRNA sequence.    46   1.1    1
AV040434|AV040434.2 Mus musculus adult male testis cDNA, partial sequence, clone 1700012F10.    34   3.2    2
AC148360|AC148360.10 Medicago truncatula clone mth2-27i5, complete sequence.    42   3.9    2
EC346836|EC346836.1 LIVERF089543J15 POSSUM_01-POSSUM-LIVER-2KB Trichosurus vulpecula cDNA clone 1061024741558, mRNA sequence.    44   4.2    1
BQ987401|BQ987401.1 QGF12C02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF12C02, mRNA sequence.    44   4.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   2e-21
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary...   103   4e-21
AK229808_1(AK229808|pid:none) Arabidopsis thaliana mRNA for hypo...   102   8e-21
CP000582_69(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...   102   1e-20
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   102   1e-20
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   102   1e-20
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   100   3e-20
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   100   3e-20
AK299145_1(AK299145|pid:none) Homo sapiens cDNA FLJ50625 complet...   100   3e-20
AB168224_1(AB168224|pid:none) Macaca fascicularis testis cDNA cl...   100   3e-20

 psg: 0.75  gvh: 0.68  alm: 0.26  top: 0.40  tms: 0.13  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHK647 is end

>SHK647Z.Seq
NNNNNNNNNNTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCTTGCCATT
GGTGCCATCATCTTGGCTTTGNATGNTGATTTCGAACCTTACTTTTCAAATTTCNTTCCA
ATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGT
ATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATC
GTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGT
GCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTT
CCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTT
TTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGGTCTCAAG
AGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTA
CTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTT
GGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATT
AGAGAATTTGTAA