SHK620
Library SH
(Link to library)
Clone ID SHK620
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13939-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHK620 (SHK620Q) /CSM/SH/SHK6-A/SHK620Q.Seq.d/
CAACGCAAAACACAACTTCTTTGTTATATTATTATTTATATATATAATTATTACTCTCTC
TTAAATATATATATATATATATAAAAATATATTTATAAAAGAAATAATTAGAGCTTTAAT
ATATATTTACTATTTTACTATTACTATTTGTGTGTTTTTTAAAACGAAATTAAAACCACA
AAATTTATAAAATTACTTTTTGTGTTTTTAAATCCAATATTATAATATTAATTCATTGTA
AATAACACAGAAATATAAACACAATAATATTTAAATTATTTTCATTTCCAAATAATTAAA
AAATAATAAAAAAAATAAAAAAAAAACTAAAATATATCTAAAATTAACCANCCAATAATA
AGTTTTCAATCTCTCAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
nakhnffvillfiyiiitls*IYIYIYKNIFIKEIIRALIYIYYFTITICVFFKTKLKPQ
NL*nyflcf*iqyyninsl*itqkykhnni*iifisk*lknnkknkkktkiylkltxq**
vfnlskk---


Translated Amino Acid sequence (All Frames)
Frame A:
qrktqllcyiiiyiynyysllniyiyi*kyiykrnn*sfniyllfyyyylcvf*neiktt
kfikllfvflnpil*y*fivnntei*tq*ylnyfhfqiikk**kk*kkn*niskinxpii
sfqslkkk---


Frame B:
nakhnffvillfiyiiitls*IYIYIYKNIFIKEIIRALIYIYYFTITICVFFKTKLKPQ
NL*nyflcf*iqyyninsl*itqkykhnni*iifisk*lknnkknkkktkiylkltxq**
vfnlskk---


Frame C:
tqnttsllyyylyi*lllslkyiyiyikiyl*kk*lel*yiftillllfvcflkrn*nhk
iykitfcvfksniiilihck*hrnintiifklfsfpnn*kiikkikkklkyi*n*pxnnk
fsisqkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK620 (SHK620Q) /CSM/SH/SHK6-A/SHK620Q.Seq.d/ 168 4e-41
CHI442 (CHI442Q) /CSM/CH/CHI4-B/CHI442Q.Seq.d/ 168 4e-41
AFH648 (AFH648Q) /CSM/AF/AFH6-B/AFH648Q.Seq.d/ 168 4e-41
VSD791 (VSD791Q) /CSM/VS/VSD7-D/VSD791Q.Seq.d/ 38 0.097
VHN422 (VHN422Q) /CSM/VH/VHN4-A/VHN422Q.Seq.d/ 38 0.097
VHK676 (VHK676Q) /CSM/VH/VHK6-D/VHK676Q.Seq.d/ 38 0.097
VHJ113 (VHJ113Q) /CSM/VH/VHJ1-A/VHJ113Q.Seq.d/ 38 0.097
VHH761 (VHH761Q) /CSM/VH/VHH7-C/VHH761Q.Seq.d/ 38 0.097
VHG723 (VHG723Q) /CSM/VH/VHG7-A/VHG723Q.Seq.d/ 38 0.097
SSJ371 (SSJ371Q) /CSM/SS/SSJ3-C/SSJ371Q.Seq.d/ 38 0.097

own update 2002.12. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF337815|AF337815.1 Dictyostelium discoideum G-box binding factor gene, promoter, partial cds. 168 6e-57 2
AL359081|AL359081.10 Human DNA sequence from clone RP11-541F9 on chromosome 1. 44 0.079 4
CO729494|CO729494.1 Hm_pupb_01C06_pBACe3.6_t7 Heliconius melpomene pupal body EST library Heliconius melpomene cDNA clone Hm_pupb_01C06 5', mRNA sequence. 48 0.15 1
CK405838|CK405838.1 AUF_IfSpn_234_g03 Ictalurus furcatus spleen cDNA library Ictalurus furcatus cDNA 5', mRNA sequence. 48 0.15 1
CK403634|CK403634.1 AUF_IfHdk_242_p01 Ictalurus furcatus head kidney cDNA library Ictalurus furcatus cDNA 5', mRNA sequence. 48 0.15 1
AC173631|AC173631.2 Strongylocentrotus purpuratus clone R3-3074I1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 48 0.15 1
AC180743|AC180743.1 Strongylocentrotus purpuratus clone R3-3083B11, WORKING DRAFT SEQUENCE, 19 unordered pieces. 48 0.15 1
AC117788|AC117788.4 Mus musculus chromosome 14 clone RP24-546F22 map 14, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 48 0.15 1
AC102818|AC102818.16 Mus musculus chromosome 14, clone RP23-78J13, complete sequence. 48 0.15 1
CT009530|CT009530.5 Mouse DNA sequence from clone RP23-33O7 on chromosome 14. 48 0.15 1
dna update 2006. 6.18
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 322,406,287
protein update 2009. 5.30
PSORT

psg: 0.70 gvh: 0.39 alm: 0.31 top: 0.60 tms: 0.07 mit: 0.36 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.54 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
24.0 %: mitochondrial
24.0 %: cytoplasmic
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SHK620 is nuc

5' end seq. ID SHK620F
5' end seq.
>SHK620F.Seq
CAACGCAAAACACAACTTCTTTGTTATATTATTATTTATATATATAATTATTACTCTCTC
TTAAATATATATATATATATATAAAAATATATTTATAAAAGAAATAATTAGAGCTTTAAT
ATATATTTACTATTTTACTATTACTATTTGTGTGTTTTTTAAAACGAAATTAAAACCACA
AAATTTATAAAATTACTTTTTGTGTTTTTAAATCCAATATTATAATATTAATTCATTGTA
AATAACACAGAAATATAAACACAATAATATTTAAATTATTTTCATTTCCAAATAATTAAA
AAATAATAAAAAAAATAAAAAAAAAACTAAAATATATCTAAAATTAACCANCCAATAATA
AGTTTTCAATCTCTCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 395
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -