>SHK603 (SHK603Q) /CSM/SH/SHK6-A/SHK603Q.Seq.d/
ATTTATTATACACAAAAAAATAAATAAATAAAGATGGGAGAATATATTTATAATGTACAA
GAAAAGATTGAAATAGTAAATGGAGAGGTATTAGAAGAAAGACAAAAATGTATGAAAAAT
TTCATTGGACTTGGACCACCTGATTTATGTATAATTAGTAAACAATATGAACCACCTAGA
TTCGTACCAGGATTAAAGACACAAAAGATATCATCCTATCATTGGACCATGGGGGTTAAT
ACAGGATCGACATCGGCAGCAGCCGTTTATTTGGGTACAATATTGGACAATCAAGAGAAA
TCGTCATTTGGTAGAGGAAATTATAAAATCGAGCAATGCCATCTCATCTCGTATAATGCG
TTCCTCAGGATGGATTTACATTTAGAATTACCCGGTACATCCAACCACCTAACACCACCA
ATCACCTACTCATTGAACTCCAATGGCGAGAAGAACCAAATCGAGGAAACATTCTGGACT
GAAACTTATTTATCATCAGTACTTCGTTACAXXXXXXXXXX

iyytqknk*IKMGEYIYNVQEKIEIVNGEVLEERQKCMKNFIGLGPPDLCIISKQYEPPR
FVPGLKTQKISSYHWTMGVNTGSTSAAAVYLGTILDNQEKSSFGRGNYKIEQCHLISYNA
FLRMDLHLELPGTSNHLTPPITYSLNSNGEKNQIEETFWTETYLSSVLRY---

Frame A:
iyytqknk*IKMGEYIYNVQEKIEIVNGEVLEERQKCMKNFIGLGPPDLCIISKQYEPPR
FVPGLKTQKISSYHWTMGVNTGSTSAAAVYLGTILDNQEKSSFGRGNYKIEQCHLISYNA
FLRMDLHLELPGTSNHLTPPITYSLNSNGEKNQIEETFWTETYLSSVLRY---


Frame B:
fiihkkink*rwenifimykkrlk**mery*kkdknv*kisldldhliyv*lvnnmnhld
syqd*rhkryhpiigpwgliqdrhrqqpfiwvqywtikrnrhlveeiikssnaissrimr
ssgwiyi*nypvhptt*hhqspth*tpmarrtksrkhsglkliyhqyfv---


Frame C:
llytkk*inkdgriyl*ctrkd*nskwrgirrktkmyekfhwtwtt*fmyn**ti*tt*i
rtrikdtkdiilsldhgg*yridigssrlfgynigqsreiviw*rkl*nrampshlv*cv
pqdgftfritryiqppnttnhllielqwreepnrgnild*nlfiistsl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK603 (SHK603Q) /CSM/SH/SHK6-A/SHK603Q.Seq.d/                        973   0.0
CHN221 (CHN221Q) /CSM/CH/CHN2-A/CHN221Q.Seq.d/                        973   0.0
CFA816 (CFA816Q) /CSM/CF/CFA8-A/CFA816Q.Seq.d/                        967   0.0
CHL733 (CHL733Q) /CSM/CH/CHL7-B/CHL733Q.Seq.d/                        961   0.0
CHQ227 (CHQ227Q) /CSM/CH/CHQ2-B/CHQ227Q.Seq.d/                        954   0.0
SHF771 (SHF771Q) /CSM/SH/SHF7-C/SHF771Q.Seq.d/                        948   0.0
AHM344 (AHM344Q) /CSM/AH/AHM3-B/AHM344Q.Seq.d/                        948   0.0
AHK438 (AHK438Q) /CSM/AH/AHK4-B/AHK438Q.Seq.d/                        948   0.0
AHB449 (AHB449Q) /CSM/AH/AHB4-C/AHB449Q.Seq.d/                        948   0.0
AHN824 (AHN824Q) /CSM/AH/AHN8-A/AHN824Q.Seq.d/                        940   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC161163|AC161163.2 Bos taurus clone CH240-72N21, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    46   0.77   3
DW999537|DW999537.1 BNDH4DCT_UP_001_B09_17DEC2004_077 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.    46   0.81   1
CN737344|CN737344.1 26RDBNT_UP_025_H08_22JAN2004_050 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.    46   0.81   1
CN565462|CN565462.1 tag26c11.y1 Hydra EST -Kiel 1 Hydra magnipapillata cDNA 5', mRNA sequence.    46   0.81   1
AF024498|AF024498.1 Caenorhabditis elegans cosmid F40H7, complete sequence.    46   0.81   1
CT025635|CT025635.2 Pan troglodytes chromosome X clone RP43-046H06 map Xq28.    46   0.81   1
AJ494721|AJ494721.1 Homo sapiens GKXP gene, promoter region.       46   0.81   1
AC005913|AC005913.2 Homo sapiens Xp22-175-176 BAC GSHB-484O17 (Genome Systems Human BAC Library) complete sequence.    46   0.81   1
AP008213|AP008213.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7.    44   1.7    2
AG118432|AG118432.1 Pan troglodytes DNA, clone: PTB-126J04.R.      34   2.1    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P87317) RecName: Full=Uncharacterized protein C31F10.16;  &CU32...    75   7e-13
FM992692_350(FM992692|pid:none) Candida dubliniensis CD36 chromo...    59   9e-08
AM920433_111(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    57   2e-07
CP000499_317(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    55   8e-07
CR382139_347(CR382139|pid:none) Debaryomyces hansenii strain CBS...    54   3e-06
AP007161_708(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    53   5e-06
AE016819_761(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    52   7e-06
AM910991_143(AM910991|pid:none) Plasmodium knowlesi strain H chr...    35   0.83
(P40955) RecName: Full=Chitin biosynthesis protein CHS6; AltName...    35   1.1
CP001146_845(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    33   3.1

 psg: 0.53  gvh: 0.33  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHK603 is nuc

>SHK603F.Seq
ATTTATTATACACAAAAAAATAAATAAATAAAGATGGGAGAATATATTTATAATGTACAA
GAAAAGATTGAAATAGTAAATGGAGAGGTATTAGAAGAAAGACAAAAATGTATGAAAAAT
TTCATTGGACTTGGACCACCTGATTTATGTATAATTAGTAAACAATATGAACCACCTAGA
TTCGTACCAGGATTAAAGACACAAAAGATATCATCCTATCATTGGACCATGGGGGTTAAT
ACAGGATCGACATCGGCAGCAGCCGTTTATTTGGGTACAATATTGGACAATCAAGAGAAA
TCGTCATTTGGTAGAGGAAATTATAAAATCGAGCAATGCCATCTCATCTCGTATAATGCG
TTCCTCAGGATGGATTTACATTTAGAATTACCCGGTACATCCAACCACCTAACACCACCA
ATCACCTACTCATTGAACTCCAATGGCGAGAAGAACCAAATCGAGGAAACATTCTGGACT
GAAACTTATTTATCATCAGTACTTCGTTACANNNNNNNNNN