SHK554
Library SH
(Link to library)
Clone ID SHK554
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHK554P
(Link to Original site)
Representative DNA sequence
>SHK554 (SHK554Q) /CSM/SH/SHK5-C/SHK554Q.Seq.d/
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTXXXXXXXXXXTAGAGAGAATAAAGACCAATT
GAATAATATGTACCNTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGG
GTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTG
GTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATG
CTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAG
ATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATC
TTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTA
CAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCT
TGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAA
AAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTT
ATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTA
TTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTA
TCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATANA
ATTATT
sequence update 2002.10.25
Translated Amino Acid sequence
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIF---

---RENKDQLNNMYXSRVGDRVGKRH*tigclrdwfnlfrsf*tfnhsyw*cygly*igq
irwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*i
l*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih
**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*
kdskfptrixl


Translated Amino Acid sequence (All Frames)
Frame A:
iikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnled
rrsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfk
rnsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sici
dlsitkeytytil*ecsftscllfnd*yi---

---*re*rpie*yvpfqsw*qswketldnwvsprlv*pf*iildf*slilvmlwvildws
dpvvytivvmlsnsyqt*krfqnski*pqkmpshlkqfklvpiwiqsfiifqiiyqrvln
tlrcw*tfslqsfeislini*risissylpwpqitsii*sivkinslrnqkqsvlklyys
lmmalqlvwlis*ny*ikikisilfigsivfn*nvklikrecwlkqmqkvskrikii*ql
krfkisnknxii

Frame B:
**ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKI
EEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILK
ETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFAS
IYQSQKNIHTQFFKNVHLQAVYYSMIDIF---

---RENKDQLNNMYXSRVGDRVGKRH*tigclrdwfnlfrsf*tfnhsyw*cygly*igq
irwftll**cyqirtrlekdskiprfnlkrcplt*nnss*yqfgfnhs*sfk*firgy*i
l*dvgkrfryrvskyr*stfkeflyhrtclglklhrsydq**r*tl*eiksnrc*sfiih
**wlcnwfglylkiirsk*rfrfsslvrsysiem*n*skenvg*skckryqrgsksfsn*
kdskfptrixl

Frame C:
nkkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*
kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*k
kqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhr
sinhkriyihnslrmfiyklsiiq*liyf---

---eriktn*iictxpelvtelerdirqlgvsetgltfldhfrllithignamgyirlvr
sgglhycsnaikfvpdlkkipkfqdltskdalspetiqastnldsiihnlsnnlsegtey
fkmlvnvfatefrnianqhlknfyiivpalasnyidhminskdklfkkskaigaeallft
ddgfaiglayilklldqnkdfdslhwfdriqlkcetdqkrmlaeanakgikedqnhlaik
kiqnfqqexny

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK554 (SHK554Q) /CSM/SH/SHK5-C/SHK554Q.Seq.d/ 2676 0.0
VHB821 (VHB821Q) /CSM/VH/VHB8-A/VHB821Q.Seq.d/ 2648 0.0
VHK424 (VHK424Q) /CSM/VH/VHK4-A/VHK424Q.Seq.d/ 1453 0.0
SHD280 (SHD280Q) /CSM/SH/SHD2-D/SHD280Q.Seq.d/ 1453 0.0
CHL807 (CHL807Q) /CSM/CH/CHL8-A/CHL807Q.Seq.d/ 1453 0.0
VHI518 (VHI518Q) /CSM/VH/VHI5-A/VHI518Q.Seq.d/ 1445 0.0
VHB614 (VHB614Q) /CSM/VH/VHB6-A/VHB614Q.Seq.d/ 1445 0.0
VHA684 (VHA684Q) /CSM/VH/VHA6-D/VHA684Q.Seq.d/ 1445 0.0
SHK609 (SHK609Q) /CSM/SH/SHK6-A/SHK609Q.Seq.d/ 1445 0.0
CHG805 (CHG805Q) /CSM/CH/CHG8-A/CHG805Q.Seq.d/ 1445 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 8e-04 3
BY464171|BY464171.1 Mus musculus 15 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:K630150M24, 3' end partial sequence. 42 0.029 2
AK113047|AK113047.1 Ciona intestinalis cDNA, clone:ciad002a21, full insert sequence. 48 0.034 2
AC168241|AC168241.2 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces. 52 0.036 1
BB822673|BB822673.1 Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830022O04, 3' end partial sequence. 32 0.12 4
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 34 0.14 3
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.14 1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10. 50 0.14 1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.14 1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.14 1
dna update 2006. 6.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 462 e-131
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 229 1e-58
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 229 2e-58
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 229 2e-58
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 227 6e-58
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 227 6e-58
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN... 227 6e-58
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 227 6e-58
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 174 7e-42
CP000600_221(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 171 7e-41
protein update 2009. 5.30
PSORT

psg: 0.79 gvh: 0.25 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHK554 is cyt

5' end seq. ID SHK554F
5' end seq.
>SHK554F.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTTNNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID SHK554Z
3' end seq.
>SHK554Z.Seq
NNNNNNNNNNTAGAGAGAATAAAGACCAATTGAATAATATGTACCNTTCCAGAGTTGGTG
ACAGAGTTGGAAAGAGACATTAGACAATTGGGTGTCTCCGAGACTGGTTTAACCTTTTTA
GATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTATATTAGATTGGTC
AGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCAGACTTGAAAAAG
ATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAAACAATTCAAGCT
AGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCAGAGGGTACTGAA
TACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATCGCTAATCAACAT
TTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATCGATCATATGATC
AATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAAGCTTTATTATTC
ACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTAGATCAAAATAAA
GATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAAACTGATCAAAAG
AGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAATCATTTAGCAATT
AAAAAGATTCAAAATTTCCAACAAGAATANAATTATT
Length of 3' end seq. 757
Connected seq. ID SHK554P
Connected seq.
>SHK554P.Seq
ATAATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGG
TCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGA
GCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGAT
AGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTC
AATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAA
AATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAA
AGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGA
ATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTT
ATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATC
GATCTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGC
TGTCTATTATTCAATGATTGATATATTTT----------TAGAGAGAATAAAGACCAATT
GAATAATATGTACCNTTCCAGAGTTGGTGACAGAGTTGGAAAGAGACATTAGACAATTGG
GTGTCTCCGAGACTGGTTTAACCTTTTTAGATCATTTTAGACTTTTAATCACTCATATTG
GTAATGCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATG
CTATCAAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAG
ATGCCCTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATC
TTTCAAATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTA
CAGAGTTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCT
TGGCCTCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAA
AAGCAATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTT
ATATCTTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTA
TTCAATTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTA
TCAAAGAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAATANA
ATTATT
Length of connected seq. 1376
Full length Seq ID -
Full length Seq. -
Length of full length seq. -