>SHK543 (SHK543Q) /CSM/SH/SHK5-B/SHK543Q.Seq.d/
AGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATT
ATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAA
TATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTT
AACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACT
TTTGAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAA
GTCCCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAATT
GAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGNGAAGTTTTA
TTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTAT
TTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGAGXXXXX
XXXXX

svlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATL
NLISAGPYGNDIEQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYII
EFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGLG--
-

Frame A:
svlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATL
NLISAGPYGNDIEQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYII
EFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGLG--
-


Frame B:
vc*kyklklkkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqhl
tlfqqvhmvti*nn*ifn*llklvkflxlxlltqiikdgkshqllin*lxkixiqlii*l
nlqiihlvlqqlvfqlxkfyliqlnqvivhlmv*fiqiiixn*vhhsqrviqifmv*---


Frame C:
cvknin*n*kknetfvfinyffcyciilxcwiiisiim*isrlfnsrxyknk*wl*gnt*
pyfsrsiw*ryrtikfsinf*n*snfxsxny*pk*skmgsptnc*siswxksxfn*lyn*
iyk*siwfcsnsyfnwxsfi*ynstk*lfi*wfnlfkllfxikyiihre*skylwfr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK543 (SHK543Q) /CSM/SH/SHK5-B/SHK543Q.Seq.d/                        906   0.0
SHI850 (SHI850Q) /CSM/SH/SHI8-C/SHI850Q.Seq.d/                        906   0.0
AHD126 (AHD126Q) /CSM/AH/AHD1-B/AHD126Q.Seq.d/                        906   0.0
AHA118 (AHA118Q) /CSM/AH/AHA1-A/AHA118Q.Seq.d/                        906   0.0
SHI181 (SHI181Q) /CSM/SH/SHI1-D/SHI181Q.Seq.d/                        904   0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/                        904   0.0
SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/                        902   0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/                        900   0.0
AHQ736 (AHQ736Q) /CSM/AH/AHQ7-B/AHQ736Q.Seq.d/                        898   0.0
AHJ309 (AHJ309Q) /CSM/AH/AHJ3-A/AHJ309Q.Seq.d/                        898   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AA550593|AA550593.1 1758m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1758m, genomic survey sequence.    40   0.35   2
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    36   0.45   3
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    36   0.47   8
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F  *** SEQUENCING IN PROGRESS  *** from clone G54.    36   0.58   3
BH944911|BH944911.1 obu81h08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46   0.85   1
AL606494|AL606494.4 Mouse DNA sequence from clone RP23-198B6 on chromosome 2.    40   0.89   3
DY772000|DY772000.1 5TH_new03_P06 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence.    36   1.0    2
DY771880|DY771880.1 5TH_new03_J24 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence.    36   1.0    2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38   1.4    6
DX401208|DX401208.1 GH__Sa0046F06.b1 Gossypium herbaceum WGS library Gossypium herbaceum genomic similar to Gossypium herbaceum repetitive sequence (unknown type), genomic survey sequence.    42   1.6    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro...    86   6e-16
CU640366_6(CU640366|pid:none) Podospora anserina genomic DNA chr...    82   7e-15
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a...    81   2e-14
AM920436_1367(AM920436|pid:none) Penicillium chrysogenum Wiscons...    81   2e-14
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a...    81   2e-14
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:...    81   2e-14
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial...    81   2e-14
AL163814_11(AL163814|pid:none) Arabidopsis thaliana DNA chromoso...    79   7e-14
AF014806_1(AF014806|pid:none) Arabidopsis thaliana alpha-glucosi...    79   7e-14
AP007169_394(AP007169|pid:none) Aspergillus oryzae RIB40 genomic...    78   2e-13

 psg: 1.02  gvh: 0.72  alm: 0.49  top: 0.27  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SHK543 is exc

>SHK543F.Seq
AGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATT
ATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAA
TATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTT
AACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATTAAATTTTCAATTAACT
TTTGAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAA
GTCCCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAATT
GAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGNGAAGTTTTA
TTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTAT
TTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAGGAGNNNNN
NNNNN