>SHK485 (SHK485Q) /CSM/SH/SHK4-D/SHK485Q.Seq.d/
CAACAAAGGAGTTGAAAATGGGAAAACAAATGACNCCAACAAAGCAACNCCAACAACAAC
AACAACAACAACCANTTTCAAANGGTANATTAAAAAAATTAAAANCTCAATCAAGTGATG
AAAANAGNGGTTCAAGTGAAAATGATGATGAANATGTTGAGGATGNGGATTCATCTGGAA
GTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
GTANCTXXXXXXXXXXGTGAACGTATTGAAATACCAACCCAATGAAACCAATACAACACT
CACCAATAAAATCATTCAATATACAAANCAACTAGAGAAAGAGTCCAGAGGTAAACGTTC
AAGAACTGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCTCAAGGAGATTTCAGA
GCAACGTGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAATTTGAATGAACGTTA
TAAGAAATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGATCAATACTTTAATAT
TTTCTTATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCATCAAAATGGTAAATT
GGATATCAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAATGGTACTGCCAAAGG
TGATACCAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGTATCATTATTATTGGC
CTTCTGGGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATTCGATGTTTTCATGGA
TGAAGTAAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGCTGAAGAAAATAGATC
AAAACAATATATTTTCGTTACACCNTTAGCNATANATCATANNNAAACCTC

TKELKMGKQMTPTKQXQQQQQQQPXSXGXLKKLKXQSSDEXXGSSENDDEXVEDXDSSGS
DXGSSDDDDDDDDDDDDDDGX---

---VNVLKYQPNETNTTLTNKIIQYTXQLEKESRGKRSRTEALKLFQDANNSLKEISEQR
DNIEELATILERNLNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDI
NVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEV
NRSISINLLMSKAEENRSKQYIFVTPLAIXHXXT

Frame A:
qqrs*kwenk*xqqsnxnnnnnnnxfqxvx*kn*xlnqvmkxxvqvkmmmxmlrmxihle
vixvvvmmmmmmmmmmmmmmvx---

---VNVLKYQPNETNTTLTNKIIQYTXQLEKESRGKRSRTEALKLFQDANNSLKEISEQR
DNIEELATILERNLNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDI
NVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEV
NRSISINLLMSKAEENRSKQYIFVTPLAIXHXXT

Frame B:
nkgvengktndxnkatptttttttxfkxxikkikxsik**kxxfk*k***xc*gxgfiwk
**x****************wx---

---*ty*ntnpmkpiqhspiksfniqxn*rkspevnvqelkl*nfsktqiipsrrfqsnv
itlknwqpywkei*mnvirngnvsvfqslvdpintlifsyqrkvtlvr*lliikmvnwis
msnfkklclpikmvlpkvipkvclvvnvlsqlyhyywpsgriwnvlsvqwmnsmfswmk*
ivqslsif*cqklkkidqnnifslhx*xxiixkp

Frame C:
TKELKMGKQMTPTKQXQQQQQQQPXSXGXLKKLKXQSSDEXXGSSENDDEXVEDXDSSGS
DXGSSDDDDDDDDDDDDDDGX---

---erieiptq*nqynthq*nhsiykxtrervqr*tfkn*sfetfprrk*fpqgdfrat*
*h*rignhigkkfe*tl*ematfpsfnls*irsil*yflikerlhwfvdf*sskw*igyq
crtsksfafqskwycqr*yqrfvww*tfflnciiiigllgeygmsfpcng*ircfhg*sk
sfnlyqsfnvks*rk*iktiyfrytxsxxsxxnl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK485 (SHK485Q) /CSM/SH/SHK4-D/SHK485Q.Seq.d/                       1217   0.0
AHL502 (AHL502Q) /CSM/AH/AHL5-A/AHL502Q.Seq.d/                       1201   0.0
SHB404 (SHB404Q) /CSM/SH/SHB4-A/SHB404Q.Seq.d/                       1193   0.0
AHO875 (AHO875Q) /CSM/AH/AHO8-D/AHO875Q.Seq.d/                       1193   0.0
AHL517 (AHL517Q) /CSM/AH/AHL5-A/AHL517Q.Seq.d/                       1193   0.0
AHI294 (AHI294Q) /CSM/AH/AHI2-D/AHI294Q.Seq.d/                       1193   0.0
AHA315 (AHA315Q) /CSM/AH/AHA3-A/AHA315Q.Seq.d/                       1193   0.0
AHI559 (AHI559Q) /CSM/AH/AHI5-C/AHI559Q.Seq.d/                       1189   0.0
AHC779 (AHC779Q) /CSM/AH/AHC7-D/AHC779Q.Seq.d/                       1179   0.0
SHF403 (SHF403Q) /CSM/SH/SHF4-A/SHF403Q.Seq.d/                       1172   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI543584|BI543584.1 FS1_E12 Sugar Beet inflorescence cDNA library (subtracted) Betasequence.    56   0.001  1
BW990978|BW990978.1 Chamaecyparis obtusa cDNA, clone: CO03893, 5' end, expressed in cambium and surrounding tissues.    50   0.090  1
CV190095|CV190095.1 vco01-3ms1-h11 Vco01 Vaccinium corymbosum cDNA clone vco01-3ms1-h11 5', mRNA sequence.    50   0.090  1
CO978855|CO978855.1 GM89003A1B05.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-825 3, mRNA sequence.    50   0.090  1
CR382133|CR382133.1 Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii.    50   0.090  1
CR380954|CR380954.1 Candida glabrata strain CBS138 chromosome H complete sequence.    48   0.36   1
AZ546660|AZ546660.1 ENTFQ22TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36   0.56   3
BH769558|BH769558.1 BMBAC366E03SP6_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence.    36   0.87   2
CC103445|CC103445.1 CSU-K34.116H2.SP6 CSU-K34 Aedes aegypti genomic clone CSU-K34.116H2 , DNA sequence.    46   1.4    1
AJ791461|AJ791461.1 Antirrhinum majus EST, clone 018_2_08_m21.     38   2.5    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6P9I7) RecName: Full=Structural maintenance of chromosomes pro...   138   3e-31
AK014442_1(AK014442|pid:none) Mus musculus 18 days pregnant adul...   136   8e-31
AK025769_1(AK025769|pid:none) Homo sapiens cDNA: FLJ22116 fis, c...   134   4e-30
AJ310551_1(AJ310551|pid:none) Homo sapiens mRNA for SMC6 protein.     133   9e-30
(Q96SB8) RecName: Full=Structural maintenance of chromosomes pro...   133   9e-30
AK003872_1(AK003872|pid:none) Mus musculus 18-day embryo whole b...   129   1e-28
BX088700_44(BX088700|pid:none) DNA centromeric region sequence f...   128   3e-28
(P53692) RecName: Full=Structural maintenance of chromosomes pro...   126   1e-27
DQ321772_1(DQ321772|pid:none) Trichomonas vaginalis strain NIH-C...   120   6e-26
AM920435_850(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   115   2e-24

 psg: 0.64  gvh: 0.28  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SHK485 is nuc

>SHK485F.Seq
CAACAAAGGAGTTGAAAATGGGAAAACAAATGACNCCAACAAAGCAACNCCAACAACAAC
AACAACAACAACCANTTTCAAANGGTANATTAAAAAAATTAAAANCTCAATCAAGTGATG
AAAANAGNGGTTCAAGTGAAAATGATGATGAANATGTTGAGGATGNGGATTCATCTGGAA
GTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
GTANCTNNNNNNNNNN

>SHK485Z.Seq
NNNNNNNNNNGTGAACGTATTGAAATACCAACCCAATGAAACCAATACAACACTCACCAA
TAAAATCATTCAATATACAAANCAACTAGAGAAAGAGTCCAGAGGTAAACGTTCAAGAAC
TGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCTCAAGGAGATTTCAGAGCAACG
TGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAATTTGAATGAACGTTATAAGAA
ATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGATCAATACTTTAATATTTTCTT
ATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCATCAAAATGGTAAATTGGATAT
CAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAATGGTACTGCCAAAGGTGATAC
CAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGTATCATTATTATTGGCCTTCTG
GGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATTCGATGTTTTCATGGATGAAGT
AAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGCTGAAGAAAATAGATCAAAACA
ATATATTTTCGTTACACCNTTAGCNATANATCATANNNAAACCTC

>SHK485P.Seq
CAACAAAGGAGTTGAAAATGGGAAAACAAATGACNCCAACAAAGCAACNCCAACAACAAC
AACAACAACAACCANTTTCAAANGGTANATTAAAAAAATTAAAANCTCAATCAAGTGATG
AAAANAGNGGTTCAAGTGAAAATGATGATGAANATGTTGAGGATGNGGATTCATCTGGAA
GTGATAGNGGTAGTAGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
GTANCT----------GTGAACGTATTGAAATACCAACCCAATGAAACCAATACAACACT
CACCAATAAAATCATTCAATATACAAANCAACTAGAGAAAGAGTCCAGAGGTAAACGTTC
AAGAACTGAAGCTTTGAAACTTTTCCAAGACGCAAATAATTCCCTCAAGGAGATTTCAGA
GCAACGTGATAACATTGAAGAATTGGCAACCATATTGGAAAGAAATTTGAATGAACGTTA
TAAGAAATGGCAACGTTTCCGTCTTTCAATCTCTCGTAGATCCGATCAATACTTTAATAT
TTTCTTATCAAAGAAAGGTTACACTGGTTCGTTGACTTTTGATCATCAAAATGGTAAATT
GGATATCAATGTCGAACTTCAAAAAGCTTTGCCTTCCAATCAAAATGGTACTGCCAAAGG
TGATACCAAAGGTTTGTCTGGTGGTGAACGTTCTTTCTCAACTGTATCATTATTATTGGC
CTTCTGGGAGAATATGGAATGTCCTTTCCGTGCAATGGATGAATTCGATGTTTTCATGGA
TGAAGTAAATCGTTCAATCTCTATCAATCTTTTAATGTCAAAAGCTGAAGAAAATAGATC
AAAACAATATATTTTCGTTACACCNTTAGCNATANATCATANNNAAACCTC