SHK470
Library SH
(Link to library)
Clone ID SHK470
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHK470P
(Link to Original site)
Representative DNA sequence
>SHK470 (SHK470Q) /CSM/SH/SHK4-C/SHK470Q.Seq.d/
CTGTTGGCCTCTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCT
TTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAA
AAAAAAXXXXXXXXXXAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGT
AATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAA
CAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATC
CAAGAACAACAAGAATAANATTAAATCAAGAAAAAAATCAACATATTATTAGAACAAGAA
ACAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
vglwxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQE*x*ikkkinilleqetk


Translated Amino Acid sequence (All Frames)
Frame A:
llasgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---kqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmv
kismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinn
nnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmln
wlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnknxiksrkkstyy*nkkq

Frame B:
cwplxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*
ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*kstt
ttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*i
g*k**tresr*efssrettis*pn*ksikkyst*ttnprttrixlnqeknqhiirtrnk

Frame C:
vglwxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---AVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGE
DIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQ
QQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAEL
AKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQE*x*ikkkinilleqetk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 680 0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 680 0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 680 0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 680 0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/ 680 0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/ 680 0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/ 680 0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/ 680 0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/ 680 0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/ 680 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 680 0.0 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 5e-25 1
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 36 0.019 10
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.045 8
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X. 36 0.18 7
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.34 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.34 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.34 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.34 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.34 1
dna update 2006. 6.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 266 8e-70
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 38 0.46
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 2.3
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom... 35 2.3
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 3.9
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.9
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 33 8.7
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 33 8.7

protein update 2009. 5.30
PSORT

psg: 0.43 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SHK470 is nuc

5' end seq. ID SHK470F
5' end seq.
>SHK470F.Seq
CTGTTGGCCTCTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCT
TTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAA
AAAAAANNNNNNNNNN
Length of 5' end seq. 136
3' end seq. ID SHK470Z
3' end seq.
>SHK470Z.Seq
NNNNNNNNNNAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGT
TCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAA
ATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGT
GAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAA
CAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAAT
GAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAA
CAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAA
CTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAA
GAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAA
TTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAA
TCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAA
CAACAAGAATAANATTAAATCAAGAAAAAAATCAACATATTATTAGAACAAGAAACAAAA
Length of 3' end seq. 720
Connected seq. ID SHK470P
Connected seq.
>SHK470P.Seq
CTGTTGGCCTCTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCT
TTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAA
AAAAAA----------AAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGT
AATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAAT
AATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAA
AATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAA
AATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAA
GAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAAT
CAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTT
GAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATT
CAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGAT
GCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAA
CAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATC
CAAGAACAACAAGAATAANATTAAATCAAGAAAAAAATCAACATATTATTAGAACAAGAA
ACAAAA
Length of connected seq. 836
Full length Seq ID -
Full length Seq. -
Length of full length seq. -