>SHK462 (SHK462Q) /CSM/SH/SHK4-C/SHK462Q.Seq.d/
XXXXXXXXXXGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAA
TACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGT

---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC

Frame A:
---f*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvq
lvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivke
ewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhv


Frame B:
---fkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsn
wskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*kr
ngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml


Frame C:
---LNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCPI
GQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKRG
MECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCC

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL842 (SHL842Q) /CSM/SH/SHL8-B/SHL842Q.Seq.d/                       1035   0.0
SHL803 (SHL803Q) /CSM/SH/SHL8-A/SHL803Q.Seq.d/                       1035   0.0
SHL783 (SHL783Q) /CSM/SH/SHL7-D/SHL783Q.Seq.d/                       1035   0.0
SHL769 (SHL769Q) /CSM/SH/SHL7-C/SHL769Q.Seq.d/                       1035   0.0
SHL744 (SHL744Q) /CSM/SH/SHL7-B/SHL744Q.Seq.d/                       1035   0.0
SHL703 (SHL703Q) /CSM/SH/SHL7-A/SHL703Q.Seq.d/                       1035   0.0
SHL613 (SHL613Q) /CSM/SH/SHL6-A/SHL613Q.Seq.d/                       1035   0.0
SHL457 (SHL457Q) /CSM/SH/SHL4-C/SHL457Q.Seq.d/                       1035   0.0
SHL394 (SHL394Q) /CSM/SH/SHL3-D/SHL394Q.Seq.d/                       1035   0.0
SHL385 (SHL385Q) /CSM/SH/SHL3-D/SHL385Q.Seq.d/                       1035   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   0.83   1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.83   3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   1.7    2
AC122932|AC122932.4 Mus musculus chromosome 1 clone RP23-16A20, complete sequence.    38   2.2    5
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   3.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                298   6e-80
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                174   1e-42
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   9e-06
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    41   0.016
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    41   0.021
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    41   0.021
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.23
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    37   0.39
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    37   0.39
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m...    34   1.9

 psg: 0.75  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SHK462 is cyt

>SHK462Z.Seq
NNNNNNNNNNGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAAA
TACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAAT
TGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTCC
AATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCAC
TGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAGG
TCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAAG
AGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAATG
TTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTAA
AAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGT