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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK443
Library SH
(Link to library)
Clone ID SHK443
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHK443 (SHK443Q) /CSM/SH/SHK4-B/SHK443Q.Seq.d/
CTGTTGGCCTACTGGNAATAAAAAACGAACAACCCAATTTAGNAAAATGGCCACATCCTA
TTCGGCTAATAATGGTCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATC
TAAATTGGTTGGAGAGCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACA
ACAAATTTGGAAGATAGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAA
TATAGATCCAGTTTCAATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGT
TAAAACTGATCATAAAATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCA
AACTAGAATTTTAAAAGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGG
AGAGATTACAGGTGAATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACC
ATTTATGATTGATTTATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTAT
TAGTCAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCCTTAAGAA
TGTTCATTTACAAGCTGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTT
AGATAGTATAATTACACAAAATACTGCTTTAGAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGNKKRTTQFXKMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQ
QIWKIEEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQ
TRILKETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNII
SQFASIYQSQKNIHTQFLKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywx*ktnnpi*xnghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lct
tnledrrsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*s
n*nfkrnsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy
*sicidlsitkeytytip*ecsftscllfnd*yifsinkfr*ynytkycf---


Frame B:
CWPTGNKKRTTQFXKMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQ
QIWKIEEALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQ
TRILKETAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNII
SQFASIYQSQKNIHTQFLKNVHLQAVYYSMIDIFSVLINLDSIITQNTAL---


Frame C:
vgllxikneqpnlxkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhn
kfgr*kkh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfvik
lef*kkqqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leill
vnlhrsinhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhkill*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK443 (SHK443Q) /CSM/SH/SHK4-B/SHK443Q.Seq.d/                       1362   0.0
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/                       1318   0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/                       1318   0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/                       1318   0.0
SHB243 (SHB243Q) /CSM/SH/SHB2-B/SHB243Q.Seq.d/                       1318   0.0
CHO318 (CHO318Q) /CSM/CH/CHO3-A/CHO318Q.Seq.d/                       1318   0.0
CHI453 (CHI453Q) /CSM/CH/CHI4-C/CHI453Q.Seq.d/                       1318   0.0
CHE540 (CHE540Q) /CSM/CH/CHE5-B/CHE540Q.Seq.d/                       1318   0.0
CHE530 (CHE530Q) /CSM/CH/CHE5-B/CHE530Q.Seq.d/                       1318   0.0
SHL271 (SHL271Q) /CSM/SH/SHL2-C/SHL271Q.Seq.d/                       1316   0.0
own update 2003.10. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR450713|CR450713.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.001  8
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   0.012  11
BX276109|BX276109.11 Mouse DNA sequence from clone RP23-209P8 on chromosome 2.    50   0.019  4
AC118642|AC118642.11 Mus musculus chromosome 18, clone RP24-112L21, complete sequence.    42   0.070  5
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16.    50   0.071  1
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09.    50   0.071  1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.071  1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10.    50   0.071  1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19.    50   0.071  1
BX990136|BX990136.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP414o21.    50   0.071  1
dna update 2006. 6.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54R74) RecName: Full=UPF0681 protein;                               423   e-117
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033;                      167   2e-40
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052...   167   2e-40
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   167   3e-40
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro...   167   3e-40
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ...   167   3e-40
CR858798_1(CR858798|pid:none) Pongo abelii mRNA; cDNA DKFZp468B1...   153   4e-36
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03...    65   1e-09
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746...    65   1e-09
AY371725_1(AY371725|pid:none) Tetrahymena thermophila macronucle...    64   3e-09
protein update 2009. 5.30
PSORT 

 psg: 0.74  gvh: 0.31  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHK443 is cyt
5' end seq. ID SHK443F
5' end seq. 
>SHK443F.Seq
CTGTTGGCCTACTGGNAATAAAAAACGAACAACCCAATTTAGNAAAATGGCCACATCCTA
TTCGGCTAATAATGGTCAAAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATC
TAAATTGGTTGGAGAGCAACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACA
ACAAATTTGGAAGATAGAAGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAA
TATAGATCCAGTTTCAATTTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGT
TAAAACTGATCATAAAATTTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCA
AACTAGAATTTTAAAAGAAACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGG
AGAGATTACAGGTGAATCATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACC
ATTTATGATTGATTTATCAGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTAT
TAGTCAATTTGCATCGATCTATCAATCACAAAAGAATATACATACACAATTCCTTAAGAA
TGTTCATTTACAAGCTGTCTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTT
AGATAGTATAATTACACAAAATACTGCTTTAGANNNNNNNNNN
Length of 5' end seq. 703
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -