>SHK341 (SHK341Q) /CSM/SH/SHK3-B/SHK341Q.Seq.d/
CACTGTTGGCCTACTGGNATTAAAATTAATAATATATAATATATAATATATATATTACTT
TTACTAATATATATTTTTTTAATCTAAAAAAATGTTAATAAATAAAATTTTATTTTTATT
TTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAA
AGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTT
AACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGC
CAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAAC
TCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAA
TCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTAC
AGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGG
TGTTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATACTGACGCAACCAAAAT
AATGGTTAAAAGTCCAGGTXXXXXXXXXX

tvgllxlkliiyni*yiyyfy*yiff*SKKMLINKILFLFFILSLTIFNIVDAGYTLSVK
GKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLT
LRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPG
VYNSKPVSLGVSSNTDATKIMVKSP---

Frame A:
hcwptgikinni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwlyfic*
rkkvniywcqcrfqny*nfvnfpknitrllnyihl*nsicq*pclyeygyglykiswkin
skgskfknpkysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rcynssw
clqfktsvigcfiky*rnqnng*ksr---


Frame B:
tvgllxlkliiyni*yiyyfy*yiff*SKKMLINKILFLFFILSLTIFNIVDAGYTLSVK
GKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLT
LRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPG
VYNSKPVSLGVSSNTDATKIMVKSP---


Frame C:
llaywx*n**yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlvilyllk
eks*yilvpm*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn*len*l
*geqi*kpqi**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkmlqlflv
ftiqnqchwvfhqiltqpk*wlkvq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK341 (SHK341Q) /CSM/SH/SHK3-B/SHK341Q.Seq.d/                        981   0.0
SHK219 (SHK219Q) /CSM/SH/SHK2-A/SHK219Q.Seq.d/                        981   0.0
SHJ425 (SHJ425Q) /CSM/SH/SHJ4-B/SHJ425Q.Seq.d/                        981   0.0
SHJ390 (SHJ390Q) /CSM/SH/SHJ3-D/SHJ390Q.Seq.d/                        981   0.0
SHJ122 (SHJ122Q) /CSM/SH/SHJ1-A/SHJ122Q.Seq.d/                        981   0.0
SHI746 (SHI746Q) /CSM/SH/SHI7-B/SHI746Q.Seq.d/                        981   0.0
SHH817 (SHH817Q) /CSM/SH/SHH8-A/SHH817Q.Seq.d/                        981   0.0
SHH641 (SHH641Q) /CSM/SH/SHH6-B/SHH641Q.Seq.d/                        981   0.0
SHH520 (SHH520Q) /CSM/SH/SHH5-A/SHH520Q.Seq.d/                        981   0.0
SHG838 (SHG838Q) /CSM/SH/SHG8-B/SHG838Q.Seq.d/                        981   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strainAX4, complete sequence.    38   0.16   6
CJ484237|CJ484237.1 Macaca fascicularis mRNA, clone: QtsA-11768, 5' end, expressed in testis.    46   0.98   1
CJ448006|CJ448006.1 Macaca fascicularis mRNA, clone: QflA-13361, 5' end, expressed in brain frontal lobe.    46   0.98   1
CZ518228|CZ518228.1 GMW2-73G17a.b1 GMW2 Glycine max genomic, genomic survey sequence.    46   0.98   1
CJ475755|CJ475755.1 Macaca fascicularis mRNA, clone: QorA-16103, 5' end, expressed in brain occipital lobe.    34   1.9    2
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    40   3.4    5
DY895079|DY895079.1 CeleSEQ14806 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ14806, mRNA sequence.    44   3.9    1
CK295567|CK295567.1 EST758281 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCV80 5' end, mRNA sequence.    44   3.9    1
CJ481609|CJ481609.1 Macaca fascicularis mRNA, clone: QtrA-17314, 5' end, expressed in brain temporal lobe.    44   3.9    1
CJ476759|CJ476759.1 Macaca fascicularis mRNA, clone: QtrA-11229, 5' end, expressed in brain temporal lobe.    44   3.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001055_10(CP001055|pid:none) Elusimicrobium minutum Pei191, co...    34   3.8
CP000356_376(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    33   4.9
BA000030_5598(BA000030|pid:none) Streptomyces avermitilis MA-468...    33   4.9
CP001283_1597(CP001283|pid:none) Bacillus cereus AH820, complete...    33   6.4
BA000039_2421(BA000039|pid:none) Thermosynechococcus elongatus B...    33   6.4
AP009493_5007(AP009493|pid:none) Streptomyces griseus subsp. gri...    33   6.4

 psg: 1.02  gvh: 0.61  alm: 0.23  top: 0.40  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHK341 is end

>SHK341F.Seq
CACTGTTGGCCTACTGGNATTAAAATTAATAATATATAATATATAATATATATATTACTT
TTACTAATATATATTTTTTTAATCTAAAAAAATGTTAATAAATAAAATTTTATTTTTATT
TTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAA
AGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTT
AACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGC
CAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAAC
TCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAA
TCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTAC
AGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGG
TGTTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATACTGACGCAACCAAAAT
AATGGTTAAAAGTCCAGGTNNNNNNNNNN