>SHK331 (SHK331Q) /CSM/SH/SHK3-B/SHK331Q.Seq.d/
XXXXXXXXXXTGGTTACTCTTCAAATTATGAAGGNGGTGATTTCGCTCAATANTGTTTCT
TGGCTTGTGATTTGAAACAGGATTATTACAATCAATTGATTGAATTGTTAAAAGATATCT
TGGTAAATATCATCATTGAACCAGAAAGAATTAAAATTGTAGCAAAGAAATTATTAGATG
CAATTCCAGAAANAAAAGAAAGTTCTGATAAAATGGTTAAAAGTGTTATTCAACATAATC
AATTCAATCATGATAAATCAAATTCTTCACATTTAAATTATTTAAAACAATATAAATTCT
TAAAAAATATTA

---GYSSNYEGGDFAQXCFLACDLKQDYYNQLIELLKDILVNIIIEPERIKIVAKKLLDA
IPEXKESSDKMVKSVIQHNQFNHDKSNSSHLNYLKQYKFLKNI

Frame A:
---GYSSNYEGGDFAQXCFLACDLKQDYYNQLIELLKDILVNIIIEPERIKIVAKKLLDA
IPEXKESSDKMVKSVIQHNQFNHDKSNSSHLNYLKQYKFLKNI


Frame B:
---vtlqimkxvislnxvswlvi*nriitin*lnc*kisw*isslnqkelkl*qrny*mq
fqkxkkvlikwlkvlfniinsiminqilhi*ii*nnins*kil


Frame C:
---llfkl*rx*frsixflgl*fetgllqsid*ivkrylgkyhh*trkn*ncskeiircn
srxkrkf**ng*kcyst*siqs**ikfftfklfkti*ilkky

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ884 (VHJ884Q) /CSM/VH/VHJ8-D/VHJ884Q.Seq.d/                        539   e-153
VHG248 (VHG248Q) /CSM/VH/VHG2-B/VHG248Q.Seq.d/                        539   e-153
VHD821 (VHD821Q) /CSM/VH/VHD8-A/VHD821Q.Seq.d/                        539   e-153
SHK331 (SHK331Q) /CSM/SH/SHK3-B/SHK331Q.Seq.d/                        539   e-153
CHP658 (CHP658Q) /CSM/CH/CHP6-C/CHP658Q.Seq.d/                        539   e-153
AHR294 (AHR294Q) /CSM/AH/AHR2-D/AHR294Q.Seq.d/                        539   e-153
AHR184 (AHR184Q) /CSM/AH/AHR1-D/AHR184Q.Seq.d/                        539   e-153
AHN844 (AHN844Q) /CSM/AH/AHN8-B/AHN844Q.Seq.d/                        539   e-153
AHA350 (AHA350Q) /CSM/AH/AHA3-C/AHA350Q.Seq.d/                        539   e-153
AFH351 (AFH351Q) /CSM/AF/AFH3-C/AFH351Q.Seq.d/                        539   e-153

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DU032454|DU032454.1 13990 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0169H02 5, genomic survey sequence.    50   0.030  1
CG747942|CG747942.1 P041-3-G01.ya Ppa EcoRI BAC Library Pristionchus pacificus genomic, genomic survey sequence.    48   0.12   1
AX251797|AX251797.1 Sequence 58 from Patent WO0168911.             38   0.23   3
BD460261|BD460261.1 Diagnosis of Diseases Associated with Cell Cycle.    38   0.23   3
BD452183|BD452183.1 Diagnosis of Diseases Associated with Cell Cycle.    38   0.23   3
AC152927|AC152927.1 Tribolium castaneum  BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence.    42   0.34   3
BV495188|BV495188.1 S217P62082RH9.T0 Noemie Pan troglodytes troglodytes STS genomic, sequence tagged site.    46   0.47   1
BV474217|BV474217.1 G591P621509FD1.T0 Clint Pan troglodytes verus STS genomic, sequence tagged site.    46   0.47   1
BV474213|BV474213.1 G591P621527RC8.T0 Clint Pan troglodytes verus STS genomic, sequence tagged site.    46   0.47   1
BV474212|BV474212.1 G591P621527RD8.T0 Clint Pan troglodytes verus STS genomic, sequence tagged site.    46   0.47   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017344_446(AE017344|pid:none) Cryptococcus neoformans var. neo...    42   0.008
AP007157_724(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.21
AP006852_333(AP006852|pid:none) Candida albicans genomic DNA, ch...    35   1.0
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.0
BX293980_939(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    34   1.3
BX293980_931(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    34   1.3
CU640366_273(CU640366|pid:none) Podospora anserina genomic DNA c...    34   1.3
BX842618_6(BX842618|pid:none) Neurospora crassa DNA linkage grou...    34   1.3
AM270071_19(AM270071|pid:none) Aspergillus niger contig An04c010...    34   1.3
AE014186_285(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.9

 psg: 0.75  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHK331 is cyt

>SHK331Z.Seq
NNNNNNNNNNTGGTTACTCTTCAAATTATGAAGGNGGTGATTTCGCTCAATANTGTTTCT
TGGCTTGTGATTTGAAACAGGATTATTACAATCAATTGATTGAATTGTTAAAAGATATCT
TGGTAAATATCATCATTGAACCAGAAAGAATTAAAATTGTAGCAAAGAAATTATTAGATG
CAATTCCAGAAANAAAAGAAAGTTCTGATAAAATGGTTAAAAGTGTTATTCAACATAATC
AATTCAATCATGATAAATCAAATTCTTCACATTTAAATTATTTAAAACAATATAAATTCT
TAAAAAATATTA