>SHK292 (SHK292Q) /CSM/SH/SHK2-D/SHK292Q.Seq.d/
ACTGTTGGCCTACTGGNATAAAGCAATAATGAATTCATTATTTAATCTCTGTTTAGATAG
AATCAATTCATTTGTAAAAACTAATGATGAATATTTTTTAGAAAATATCACAGATTATAA
TAATAATAATAATAATAATTTAAATGATAATGAAAATGGTGAAGATGATGATGATGAAGA
ATATTATAATGACAATAGTTTTGAAAGTATTAATAGAAGTGAAGATGCACCACTTTCAAA
ATTATATGAAATCTCTACAATAACTAAAAATAAAAATAATAAAAATAATAATAATAATAA
AATTAAATTTTATAACACATTAATTAAGGCATTAATTGAAAGAAATAAATTAAGTGTTGA
TATACTTTATCAACTTTCATTATCAATACCTCTTCATTTTATAACATTTTTAGATTTAAA
ATCAAATTTTGTTTCAAATAATCATTGTTTAAACATTTCAAGAATTAAAACAATTAGATT
TTTAAATTTATCAAATTCAAATAAATTAGAAGATAAAGGTATAAAATATTTAAAAGGGTT
ACCAAAGTTAACAGAATTGGATATATCAAATTGTTGTAGAATTACCAATAGATCATTAAA
GTATATTGGTTTTACGACAAGACTTGAACAATTGGATATATCGAATAATTTGAATTTAAA
TGACCCAAGCATTTAAATATCTAATGGTACTAAGTAGACXXXXXXXXXXGANCANCAACC
AAAAACNCCAATTCAATCACCAATTCAAAAGGCNCCAAANCAANCNCCAGAACANCAANC
ANCAACAACCACCAAAAACATCAATTCAATCACCAATCCAAAAGACACCAAAACAAACAC
CAGAACAACAACCAAAAACACCAAATCAATCACCAATCCAAAAGACACCAAAACAAACAC
AACCAAAAACACCAAACCAATCACCAATCCAAAAGACACCTCAATTACCATTACTAAGAC
AAACACCACATAGACTAAGATTATCACCACAACAACAGCAGCAAACTCAAACGCCATTAA
AAAATATAACACCAAACAAGTTATTAAGTATTGATATTAACAATTTTATAAATATAAGTA
ATAACAAGAATAATAGTAATTATACTCCTTCAAAATATAATTGCAGTCCAGAATATAAAC
AGAGAGAATCTGAAAATGGTGAAATCAAACTTGAAGATATAGAAATTAGTGTAATCATTG
AACCAATTGTTGAAACACCAACAAAACAATCAAAAAAGAGAAAAAGTTATCCTTTATCGG
CTTCCAAAAATTATGGAAATTACGAAAGAATTGATTCCAGCCAAAAAATTTCAAAATTGG
TATTTGGTGAATAAAAAAATATAAAATAAAAATCATAATAATAAATTTGTAAATAATGTA
AATAAATAAACAATAAATAAATAAAAAATTTTAGGGGTTTATT

cwptgikq**ihylisv*iesihl*klmmnif*kisqiiiiiiiii*mimkmvkmmmmkn
iimtivlkvlievkmhhfqnymkslq*lkikiikiiiiiklnfith*lrh*lkein*vli
yfinfhyqylfil*hf*i*nqilfqiiiv*tfqelkqldf*iyqiqin*kikv*ni*kgy
qs*qnwiyqivvelpidh*silvlrqdlnnwiyrii*i*MTQAFKYLMVLSR---

---XXNQKXQFNHQFKRXQXXXQNXXXQQPPKTSIQSPIQKTPKQTPEQQPKTPNQSPIQ
KTPKQTQPKTPNQSPIQKTPQLPLLRQTPHRLRLSPQQQQQTQTPLKNITPNKLLSIDIN
NFINISNNKNNSNYTPSKYNCSPEYKQRESENGEIKLEDIEISVIIEPIVETPTKQSKKR
KSYPLSASKNYGNYERIDSSQKISKLVFGE*knik*ks***ick*ck*innk*iknfrgl

Frame A:
tvgllx*snnefii*slfr*nqfickn***iffrkyhrl*******fk***kw*r****r
il**q*f*ky**k*rcttfkii*nlynn*k*k**k*****n*il*hin*gin*kk*ikc*
ytlstfiintssfynifrfkikfcfk*slfkhfkn*nn*ifkfikfk*irr*rykifkrv
tkvnrigyikll*nyq*iikvywfydkt*tigyie*fefk*pkhlni*wy*vd---

---xxqpktpiqspiqkapxqxpexqxxtttkninsitnpkdtktntrtttkntksitnp
kdtktnttkntkpitnpkdtsititktntt*tkiittttaansnaikkyntkqviky*y*
qfykyk**qe***lysfki*lqsri*teri*kw*nqt*ryrn*cnh*tnc*ntnktikke
kklsfigfqklwklrkn*fqpknfkigiw*ikkykikiiiinl*im*inkq*inkkf*gf
i

Frame B:
llaywxkaimnslfnlcldrinsfvktndeyflenitdynnnnnnnlndnengeddddee
yyndnsfesinrsedaplsklyeistitknknnknnnnnkikfyntlikaliernklsvd
ilyqlslsiplhfitfldlksnfvsnnhclnisriktirflnlsnsnkledkgikylkgl
pklteldisnccritnrslkyigfttrleqldisnnlnlndpsi*isngtk*---

---XXNQKXQFNHQFKRXQXXXQNXXXQQPPKTSIQSPIQKTPKQTPEQQPKTPNQSPIQ
KTPKQTQPKTPNQSPIQKTPQLPLLRQTPHRLRLSPQQQQQTQTPLKNITPNKLLSIDIN
NFINISNNKNNSNYTPSKYNCSPEYKQRESENGEIKLEDIEISVIIEPIVETPTKQSKKR
KSYPLSASKNYGNYERIDSSQKISKLVFGE*knik*ks***ick*ck*innk*iknfrgl

Frame C:
cwptgikq**ihylisv*iesihl*klmmnif*kisqiiiiiiiii*mimkmvkmmmmkn
iimtivlkvlievkmhhfqnymkslq*lkikiikiiiiiklnfith*lrh*lkein*vli
yfinfhyqylfil*hf*i*nqilfqiiiv*tfqelkqldf*iyqiqin*kikv*ni*kgy
qs*qnwiyqivvelpidh*silvlrqdlnnwiyrii*i*MTQAFKYLMVLSR---

---xxtknxnsitnskgxkxxxrtxxxnnhqkhqfnhqskrhqnkhqnnnqkhqinhqsk
rhqnkhnqkhqtnhqskrhlnyhy*dkhhid*dyhhnnssklkrh*ki*hqtsy*vlilt
il*i*vitriiviillqniiavqninrenlkmvksnlki*klv*slnqllkhqqnnqkre
kvilyrlpkimeitkelipakkfqnwylvnkki*nknhnnkfvnnvnk*tink*kilgvy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK292 (SHK292Q) /CSM/SH/SHK2-D/SHK292Q.Seq.d/                        797   0.0
SHL210 (SHL210Q) /CSM/SH/SHL2-A/SHL210Q.Seq.d/                         48   4e-04
SHD483 (SHD483Q) /CSM/SH/SHD4-D/SHD483Q.Seq.d/                         48   4e-04
AHQ739 (AHQ739Q) /CSM/AH/AHQ7-B/AHQ739Q.Seq.d/                         48   4e-04
AHJ210 (AHJ210Q) /CSM/AH/AHJ2-A/AHJ210Q.Seq.d/                         48   4e-04
AHI807 (AHI807Q) /CSM/AH/AHI8-A/AHI807Q.Seq.d/                         48   4e-04
AHF869 (AHF869Q) /CSM/AH/AHF8-C/AHF869Q.Seq.d/                         48   4e-04
AHF552 (AHF552Q) /CSM/AH/AHF5-C/AHF552Q.Seq.d/                         48   4e-04
SSC113 (SSC113Q) /CSM/SS/SSC1-A/SSC113Q.Seq.d/                         42   0.023
CFG862 (CFG862Q) /CSM/CF/CFG8-C/CFG862Q.Seq.d/                         42   0.023

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 mapcomplement(1004496-821614) strain AX4, complete sequence.    40   6e-04  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.012  15
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   0.016  12
EB825800|EB825800.1 1082725 KZ01 Plodia interpunctella cDNA clone 553530, mRNA sequence.    42   0.030  2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    36   0.032  8
AW191573|AW191573.1 BSBmMFSZ31K18SK Brugia malayi microfilaria cDNA (SAW94LS-BmMf) Brugia malayi cDNA clone BSBmMFSZ31K18 5', mRNA sequence.    40   0.032  2
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    44   0.041  12
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    38   0.052  7
AF538053|AF538053.1 Monosiga brevicollis mitochondrion, complete genome.    34   0.053  7
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    40   0.070  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX908798_335(BX908798|pid:none) Parachlamydia-related symbiont U...    53   2e-05
BX908798_1926(BX908798|pid:none) Parachlamydia-related symbiont ...    53   3e-05
BX908798_1033(BX908798|pid:none) Parachlamydia-related symbiont ...    51   9e-05
BX908798_1025(BX908798|pid:none) Parachlamydia-related symbiont ...    51   1e-04
BX908798_1197(BX908798|pid:none) Parachlamydia-related symbiont ...    50   1e-04
BX908798_888(BX908798|pid:none) Parachlamydia-related symbiont U...    50   2e-04
BX908798_1031(BX908798|pid:none) Parachlamydia-related symbiont ...    50   3e-04
BX908798_1141(BX908798|pid:none) Parachlamydia-related symbiont ...    49   6e-04
BX908798_1272(BX908798|pid:none) Parachlamydia-related symbiont ...    48   7e-04
BX908798_1955(BX908798|pid:none) Parachlamydia-related symbiont ...    48   7e-04

 psg: 0.75  gvh: 0.47  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.17
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SHK292 is mit

>SHK292F.Seq
ACTGTTGGCCTACTGGNATAAAGCAATAATGAATTCATTATTTAATCTCTGTTTAGATAG
AATCAATTCATTTGTAAAAACTAATGATGAATATTTTTTAGAAAATATCACAGATTATAA
TAATAATAATAATAATAATTTAAATGATAATGAAAATGGTGAAGATGATGATGATGAAGA
ATATTATAATGACAATAGTTTTGAAAGTATTAATAGAAGTGAAGATGCACCACTTTCAAA
ATTATATGAAATCTCTACAATAACTAAAAATAAAAATAATAAAAATAATAATAATAATAA
AATTAAATTTTATAACACATTAATTAAGGCATTAATTGAAAGAAATAAATTAAGTGTTGA
TATACTTTATCAACTTTCATTATCAATACCTCTTCATTTTATAACATTTTTAGATTTAAA
ATCAAATTTTGTTTCAAATAATCATTGTTTAAACATTTCAAGAATTAAAACAATTAGATT
TTTAAATTTATCAAATTCAAATAAATTAGAAGATAAAGGTATAAAATATTTAAAAGGGTT
ACCAAAGTTAACAGAATTGGATATATCAAATTGTTGTAGAATTACCAATAGATCATTAAA
GTATATTGGTTTTACGACAAGACTTGAACAATTGGATATATCGAATAATTTGAATTTAAA
TGACCCAAGCATTTAAATATCTAATGGTACTAAGTAGACNNNNNNNNNN

>SHK292Z.Seq
NNNNNNNNNNGANCANCAACCAAAAACNCCAATTCAATCACCAATTCAAAAGGCNCCAAA
NCAANCNCCAGAACANCAANCANCAACAACCACCAAAAACATCAATTCAATCACCAATCC
AAAAGACACCAAAACAAACACCAGAACAACAACCAAAAACACCAAATCAATCACCAATCC
AAAAGACACCAAAACAAACACAACCAAAAACACCAAACCAATCACCAATCCAAAAGACAC
CTCAATTACCATTACTAAGACAAACACCACATAGACTAAGATTATCACCACAACAACAGC
AGCAAACTCAAACGCCATTAAAAAATATAACACCAAACAAGTTATTAAGTATTGATATTA
ACAATTTTATAAATATAAGTAATAACAAGAATAATAGTAATTATACTCCTTCAAAATATA
ATTGCAGTCCAGAATATAAACAGAGAGAATCTGAAAATGGTGAAATCAAACTTGAAGATA
TAGAAATTAGTGTAATCATTGAACCAATTGTTGAAACACCAACAAAACAATCAAAAAAGA
GAAAAAGTTATCCTTTATCGGCTTCCAAAAATTATGGAAATTACGAAAGAATTGATTCCA
GCCAAAAAATTTCAAAATTGGTATTTGGTGAATAAAAAAATATAAAATAAAAATCATAAT
AATAAATTTGTAAATAATGTAAATAAATAAACAATAAATAAATAAAAAATTTTAGGGGTT
TATT

>SHK292P.Seq
ACTGTTGGCCTACTGGNATAAAGCAATAATGAATTCATTATTTAATCTCTGTTTAGATAG
AATCAATTCATTTGTAAAAACTAATGATGAATATTTTTTAGAAAATATCACAGATTATAA
TAATAATAATAATAATAATTTAAATGATAATGAAAATGGTGAAGATGATGATGATGAAGA
ATATTATAATGACAATAGTTTTGAAAGTATTAATAGAAGTGAAGATGCACCACTTTCAAA
ATTATATGAAATCTCTACAATAACTAAAAATAAAAATAATAAAAATAATAATAATAATAA
AATTAAATTTTATAACACATTAATTAAGGCATTAATTGAAAGAAATAAATTAAGTGTTGA
TATACTTTATCAACTTTCATTATCAATACCTCTTCATTTTATAACATTTTTAGATTTAAA
ATCAAATTTTGTTTCAAATAATCATTGTTTAAACATTTCAAGAATTAAAACAATTAGATT
TTTAAATTTATCAAATTCAAATAAATTAGAAGATAAAGGTATAAAATATTTAAAAGGGTT
ACCAAAGTTAACAGAATTGGATATATCAAATTGTTGTAGAATTACCAATAGATCATTAAA
GTATATTGGTTTTACGACAAGACTTGAACAATTGGATATATCGAATAATTTGAATTTAAA
TGACCCAAGCATTTAAATATCTAATGGTACTAAGTAGAC----------GANCANCAACC
AAAAACNCCAATTCAATCACCAATTCAAAAGGCNCCAAANCAANCNCCAGAACANCAANC
ANCAACAACCACCAAAAACATCAATTCAATCACCAATCCAAAAGACACCAAAACAAACAC
CAGAACAACAACCAAAAACACCAAATCAATCACCAATCCAAAAGACACCAAAACAAACAC
AACCAAAAACACCAAACCAATCACCAATCCAAAAGACACCTCAATTACCATTACTAAGAC
AAACACCACATAGACTAAGATTATCACCACAACAACAGCAGCAAACTCAAACGCCATTAA
AAAATATAACACCAAACAAGTTATTAAGTATTGATATTAACAATTTTATAAATATAAGTA
ATAACAAGAATAATAGTAATTATACTCCTTCAAAATATAATTGCAGTCCAGAATATAAAC
AGAGAGAATCTGAAAATGGTGAAATCAAACTTGAAGATATAGAAATTAGTGTAATCATTG
AACCAATTGTTGAAACACCAACAAAACAATCAAAAAAGAGAAAAAGTTATCCTTTATCGG
CTTCCAAAAATTATGGAAATTACGAAAGAATTGATTCCAGCCAAAAAATTTCAAAATTGG
TATTTGGTGAATAAAAAAATATAAAATAAAAATCATAATAATAAATTTGTAAATAATGTA
AATAAATAAACAATAAATAAATAAAAAATTTTAGGGGTTTATT