>SHK287 (SHK287Q) /CSM/SH/SHK2-D/SHK287Q.Seq.d/
XXXXXXXXXXTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCC
NATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCAAAATTACAAAATGAAATGGACCAATTAGAAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGANAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCANCAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCATCAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATNAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG

---*dcnsngkc*k**nypmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkml
qnykmkwtn*KLLLEENEEEQFSNKNLQQLNENXNQQQQQGQQQVQAXNVEQQIVEQLKV
IKEFQRQDHQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNXQENQDENLVQE

Frame A:
---hkivtqmgnvenneitx*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trc
ckitk*ngpirnsylkrmkknnfqikiynnlmrmxinnnnkdnnkfkxqmlnnkslnnlk
lsknfkdkiikrnkkfnkrtmlst*vmlkklnlnwmlnwlkixnkrikmri*fk


Frame B:
---irl*lkwemlkimklpxeqdaieqaqhlqriengedideyeaaqhevafldeneqda
aklqnemdqletlt*re*rrtifk*kfttt**e*xsttttrtttsssxkc*ttnr*tt*s
yqrisktrssketknstrercclle*c*ksst*igc*ig*k*xtresr*efssr


Frame C:
---*dcnsngkc*k**nypmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkml
qnykmkwtn*KLLLEENEEEQFSNKNLQQLNENXNQQQQQGQQQVQAXNVEQQIVEQLKV
IKEFQRQDHQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNXQENQDENLVQE

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK287 (SHK287Q) /CSM/SH/SHK2-D/SHK287Q.Seq.d/                        498   e-140
VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        458   e-128
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        458   e-128
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        458   e-128
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        458   e-128
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        458   e-128
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        458   e-128
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        458   e-128
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        458   e-128
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/                        458   e-128

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   349   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    66   1e-16  2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.21   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.21   1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence.    48   0.21   1
AC162641|AC162641.2 Bos taurus clone CH240-120J5, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    44   0.28   4
AL110477|AL110477.2 Caenorhabditis elegans YAC Y113G7B.            40   0.72   3
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence.    46   0.82   1
DN301510|DN301510.1 PL04022B2C12 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   0.82   1
DN296890|DN296890.1 PL04007B1D10 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    46   0.82   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   108   2e-25
AE017194_4937(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    33   4.2
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    32   7.1
CP000061_184(CP000061|pid:none) Aster yellows witches'-broom phy...    32   7.1
(Q895J8) RecName: Full=Translation initiation factor IF-2;  &AE0...    32   9.3
BT074676_1(BT074676|pid:none) Osmerus mordax clone omor-eva-515-...    32   9.3

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SHK287 is nuc

>SHK287Z.Seq
NNNNNNNNNNTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCC
NATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCAAAATTACAAAATGAAATGGACCAATTAGAAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGANAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCANCAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCATCAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATNAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG