SHK278
Library SH
(Link to library)
Clone ID SHK278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10823-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/
CTGTTGGCCTACTGGNAGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACT
TTTGTCTTCATTAATTATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATC
AGCATCATTATGTAAATATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGG
TTATGAGGCAACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATT
AAATTTTCAATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAA
TAATCAAAGATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTC
AACTGATTATATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTC
AACTGGTGAAGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAAT
TTATTCAAATTATTATTTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTA
TGGTTTAGGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
cwptgsvlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNG
YEATLNLISAGPYGNDIEQLNFQLTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDS
TDYIIEFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIY
GL---


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxcvknin*n*kknetfvfinyffcyciilxcwiiisiim*isrlfnsrxyknk*w
l*gnt*pyfsrsiw*ryrtikfsinf*n*snf*s*ny*pk*skmgsptnc*siswrksrf
n*lyn*iyk*siwfcsnsyfnw*sfi*ynstk*lfi*wfnlfkllfxikyiihre*skyl
wf---


Frame B:
cwptgsvlki*TKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNG
YEATLNLISAGPYGNDIEQLNFQLTFETSQIFRVRITDPNNQRWEVPPTVNQLVGENPDS
TDYIIEFTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIY
GL---


Frame C:
vgllxvc*kyklklkkk*nfclh*lfflllyyfxlldhyqhhyvniqviqlkxlqkqimv
mrqhltlfqqvhmvti*nn*ifn*llklvkflelelltqiikdgkshqllin*lekiqiq
lii*lnlqiihlvlqqlvfqlvkfyliqlnqvivhlmv*fiqiiixn*vhhsqrviqifm
v*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK278 (SHK278Q) /CSM/SH/SHK2-D/SHK278Q.Seq.d/ 957 0.0
SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 926 0.0
SHK458 (SHK458Q) /CSM/SH/SHK4-C/SHK458Q.Seq.d/ 922 0.0
SHI181 (SHI181Q) /CSM/SH/SHI1-D/SHI181Q.Seq.d/ 920 0.0
AHA118 (AHA118Q) /CSM/AH/AHA1-A/AHA118Q.Seq.d/ 920 0.0
CHG731 (CHG731Q) /CSM/CH/CHG7-B/CHG731Q.Seq.d/ 916 0.0
VHJ526 (VHJ526Q) /CSM/VH/VHJ5-B/VHJ526Q.Seq.d/ 914 0.0
AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/ 914 0.0
SHJ667 (SHJ667Q) /CSM/SH/SHJ6-C/SHJ667Q.Seq.d/ 910 0.0
AHJ309 (AHJ309Q) /CSM/AH/AHJ3-A/AHJ309Q.Seq.d/ 910 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strainAX4, complete sequence. 36 0.017 7
BE323805|BE323805.2 NF010E10PL1F1071 Phosphate starved leaf Medicago truncatula cDNA clone NF010E10PL 5', mRNA sequence. 50 0.056 1
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence. 36 0.13 4
AA550593|AA550593.1 1758m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1758m, DNA sequence. 40 0.36 2
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence. 36 0.55 8
AL449924|AL449924.1 Streptococcus pneumoniae serotype 19F *** SEQUENCING IN PROGRESS *** from clone G54. 36 0.62 3
BH944911|BH944911.1 obu81h08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 46 0.87 1
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome. 46 0.87 1
DY772000|DY772000.1 5TH_new03_P06 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence. 36 1.1 2
DY771880|DY771880.1 5TH_new03_J24 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence. 36 1.1 2
dna update 2006. 6. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX294013_13(BX294013|pid:none) Neurospora crassa DNA linkage gro... 87 2e-16
BC115034_1(BC115034|pid:none) Homo sapiens sucrase-isomaltase (a... 85 1e-15
CU640366_6(CU640366|pid:none) Podospora anserina genomic DNA chr... 85 1e-15
BC116452_1(BC116452|pid:none) Homo sapiens sucrase-isomaltase (a... 85 1e-15
(P14410) RecName: Full=Sucrase-isomaltase, intestinal; Contains:... 85 1e-15
M22616_1(M22616|pid:none) Human sucrase-isomaltase mRNA, partial... 85 1e-15
AL163814_11(AL163814|pid:none) Arabidopsis thaliana DNA chromoso... 84 2e-15
AF014806_1(AF014806|pid:none) Arabidopsis thaliana alpha-glucosi... 84 2e-15
AM920436_1367(AM920436|pid:none) Penicillium chrysogenum Wiscons... 82 1e-14
AM467592_1(AM467592|pid:none) Vitis vinifera contig VV78X160209.... 80 3e-14
protein update 2009. 5.30
PSORT

psg: 1.02 gvh: 0.72 alm: 0.52 top: 0.27 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SHK278 is exc

5' end seq. ID SHK278F
5' end seq.
>SHK278F.Seq
CTGTTGGCCTACTGGNAGTGTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACT
TTTGTCTTCATTAATTATTTTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATC
AGCATCATTATGTAAATATCCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGG
TTATGAGGCAACACTTAACCTTATTTCAGCAGGTCCATATGGTAACGATATAGAACAATT
AAATTTTCAATTAACTTTTGAAACTAGTCAAATTTTTAGAGTTAGAATTACTGACCCAAA
TAATCAAAGATGGGAAGTCCCACCAACTGTTAATCAATTAGTTGGAGAAAATCCAGATTC
AACTGATTATATAATTGAATTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTC
AACTGGTGAAGTTTTATTTAATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAAT
TTATTCAAATTATTATTTANAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTA
TGGTTTAGGNNNNNNNNNN
Length of 5' end seq. 559
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -