>SHK246 (SHK246Q) /CSM/SH/SHK2-B/SHK246Q.Seq.d/
CTGTTGGCCTACTGGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCT
GATGGATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGT
GTACCAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCC
ACACTTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTC
AGTGATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTG
ATCACTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGAT
AGTGGTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACA
GATCTTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTT
TTCGATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGT
TGGATTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCA
TCATTCAATTTACCAAAATCAAATCCAAXXXXXXXXXXGAGAGTGCTGGTGTTTGTGGTG
GGTTAATTGGTACAAATCCCAATTTCAATTGGTACAATGATTGAACAAGGACCAGGTGGT
GGTGAATTTTTCGATGACAATTTTAGTGATCGTGATTGGCAACATGATGAAACCACTTGG
GGTTCTTCATATTATTTACCAGGTAGTGGTGAAGTCATTGGTGGAGCATACGATCTTTTA
TCAACCAATGAAGCAATTGTAAAACATTGGTCAGTCTATAATGGTCGTGTTTTATATGGT
TTCATTTTAATTCATGGTGCTGGTTTAGATTATGTTTTCAATAAAGTTAATGGTTTAGGT
GATATGGATGCAAATTGTAGATTACCAAATACTTATATTGGCAATTACGTTTGGTATGAT
CTAAATAAAAATGGTCTTCAAGATCCAAATGAAAAAGGAATGGCAAATATTACTGTTCAA
TTATTTAGTGCCGCTAATTCAACATTCATTAATTCAACTCTAACCGATTCCTCTGGTAAT
TACAATTTCCAAGTCATTTCAGAGTTTAAATATAGAGTTCATTTCGTTGCTCCAAAAGGT
TTCACTTATTCTCCTATCGTTACTGTTAGTAGTGATCCTAATGATAAAAGAGATTTGGAA
AAAATCAATAGTTTACCTGATTCAAAAGGTGACGCATATTTCTTTGCTAATGGTAATGGT
NAAAATACTCAAGA

LLAYWVDADSYPINSYTTGPDGYYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHS
TLSNITIWSPDNPMVVNATLSDHVNAQYILREQNKGIIRVITYAIGGKVIPDFKNTTYKD
SGYAGGAVIVQLYRNNSIATDLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPG
WIFEKYRITQTPFIQLDLLPSFNLPKSNP---

---ESAGVCGGLIGTNPNFNWYND*trtrww*ifr*qf**s*lat**nhlgffilftr*w
*shwwsirsfinq*sncktlvsl*wscfiwfhfnswcwfrlcfq*s*wfr*ygckl*itk
ylywqlrlv*sk*kwssrsk*krngkyycsii*cr*fnih*fnsnrflw*lqfpshfrv*
i*ssfrcskrfhlfsyryc***s***krfgknq*ft*fkr*riflc*w*wxkysr

Frame A:
LLAYWVDADSYPINSYTTGPDGYYKFDDFSFGKYIITFSGVPDLIYQFYKPDDQQHLNHS
TLSNITIWSPDNPMVVNATLSDHVNAQYILREQNKGIIRVITYAIGGKVIPDFKNTTYKD
SGYAGGAVIVQLYRNNSIATDLRGNPIPSVLTNVLTGEYLFDNVPILEGYQVMFSSPPPG
WIFEKYRITQTPFIQLDLLPSFNLPKSNP---

---ESAGVCGGLIGTNPNFNWYND*trtrww*ifr*qf**s*lat**nhlgffilftr*w
*shwwsirsfinq*sncktlvsl*wscfiwfhfnswcwfrlcfq*s*wfr*ygckl*itk
ylywqlrlv*sk*kwssrsk*krngkyycsii*cr*fnih*fnsnrflw*lqfpshfrv*
i*ssfrcskrfhlfsyryc***s***krfgknq*ft*fkr*riflc*w*wxkysr

Frame B:
cwptglmliliqlihiqrvlmdtinsmishlvnil*hlavyqi*sinsinqminni*iip
hfqi*qfghqiiqwl*mqhsvimstlniflenkikvlle*slmqlevrlyqilktqhiri
vvtrvvll*fnytvtiq*qqifvviqyhry*pmy*lvnifsimyqs*rvik*cfqvhhqv
gflksieslkphsfnlifyhhsiyqnqiq---

---rvlvfvvg*lvqipisigtmieqgpgggeffddnfsdrdwqhdettwgssyylpgsg
eviggaydllstneaivkhwsvyngrvlygfilihgagldyvfnkvnglgdmdancrlpn
tyignyvwydlnknglqdpnekgmanitvqlfsaanstfinstltdssgnynfqvisefk
yrvhfvapkgftyspivtvssdpndkrdlekinslpdskgdayffangngxntq

Frame C:
vgllg*c*flsn*fiyngs*wil*ir*fliw*iyyni*rctrfnlsil*tr*sttfksfh
tfkynnlvtr*sngckcntq*scqrsiys*rtk*ryy*sdhlcnwr*gytrf*khni*g*
wlrgwccyssiip*qfnsnrssw*sntigidqcidw*isfr*ctnlrglssnvfksttrl
df*kv*nhsnpihst*sftiiqftkiks---

---ecwclwwvnwyksqfqlvq*lnkdqvvvnfsmtilvivignmmkplgvlhiiyqvvv
kslvehtifyqpmkql*nigqsimvvfymvsf*fmvlv*imfsiklmv*viwmqivdyqi
lilaitfgmi*ikmvfkiqmkkewqillfnylvpliqhsliql*piplvitisksfqsln
iefisllqkvslillslllvvilmikeiwkksivyliqkvthisllmvmvkilk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK246 (SHK246Q) /CSM/SH/SHK2-B/SHK246Q.Seq.d/                       2579   0.0
SHC120 (SHC120Q) /CSM/SH/SHC1-A/SHC120Q.Seq.d/                       1342   0.0
CHN216 (CHN216Q) /CSM/CH/CHN2-A/CHN216Q.Seq.d/                       1332   0.0
CHM864 (CHM864Q) /CSM/CH/CHM8-C/CHM864Q.Seq.d/                       1316   0.0
CHL353 (CHL353Q) /CSM/CH/CHL3-C/CHL353Q.Seq.d/                       1316   0.0
AHA670 (AHA670Q) /CSM/AH/AHA6-C/AHA670Q.Seq.d/                       1308   0.0
CHQ323 (CHQ323Q) /CSM/CH/CHQ3-A/CHQ323Q.Seq.d/                       1302   0.0
AHE889 (AHE889Q) /CSM/AH/AHE8-D/AHE889Q.Seq.d/                       1292   0.0
SHK194 (SHK194Q) /CSM/SH/SHK1-D/SHK194Q.Seq.d/                       1285   0.0
AHD178 (AHD178Q) /CSM/AH/AHD1-D/AHD178Q.Seq.d/                       1285   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strainAX4, complete sequence.  1294   0.0    2
CJ486536|CJ486536.1 Macaca fascicularis mRNA, clone: QtsA-14165, 5' end, expressed in testis.    42   0.012  2
AA766861|AA766861.1 oc87g09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone IMAGE:1356736 3' similar to contains element TAR1 repetitive element ;, mRNA sequence.    50   0.14   1
AC087791|AC087791.2 Homo sapiens chromosome 15 clone RP11-519G16 map 15, WORKING DRAFT SEQUENCE, 19 unordered pieces.    50   0.14   1
AC025580|AC025580.8 Homo sapiens chromosome 15 clone RP11-519G16 map 15q21.1, complete sequence.    50   0.14   1
BY983347|BY983347.1 Physcomitrella patens subsp. patens cDNA clone: PPLS117N09, 5'end.    48   0.54   1
CJ447628|CJ447628.1 Macaca fascicularis mRNA, clone: QflA-12967, 5' end, expressed in brain frontal lobe.    48   0.54   1
AM076235|AM076235.1 Staphylococcus aureus partial sdrD gene for Ser-Asp rich  fibrinogen-binding, bone sialoprotein-binding protein, strain GE79,  allele 10.    48   0.54   1
AM076231|AM076231.1 Staphylococcus aureus partial sdrD gene for Ser-Asp rich  fibrinogen-binding, bone sialoprotein-binding protein, strain 4C6F,  allele 4.    48   0.54   1
AM076229|AM076229.1 Staphylococcus aureus partial sdrD gene for Ser-Asp rich  fibrinogen-binding, bone sialoprotein-binding protein, strain  45030564, allele 8.    48   0.54   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O70022) RecName: Full=Fibrinogen-binding protein; Flags: Precur...    75   4e-12
CP000029_203(CP000029|pid:none) Staphylococcus epidermidis RP62A...    75   4e-12
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    75   5e-12
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    74   1e-11
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    74   1e-11
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    74   1e-11

 psg: 0.75  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHK246 is cyt

>SHK246F.Seq
CTGTTGGCCTACTGGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCT
GATGGATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGT
GTACCAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCC
ACACTTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTC
AGTGATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTG
ATCACTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGAT
AGTGGTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACA
GATCTTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTT
TTCGATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGT
TGGATTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCA
TCATTCAATTTACCAAAATCAAATCCAANNNNNNNNNN

>SHK246Z.Seq
NNNNNNNNNNGAGAGTGCTGGTGTTTGTGGTGGGTTAATTGGTACAAATCCCAATTTCAA
TTGGTACAATGATTGAACAAGGACCAGGTGGTGGTGAATTTTTCGATGACAATTTTAGTG
ATCGTGATTGGCAACATGATGAAACCACTTGGGGTTCTTCATATTATTTACCAGGTAGTG
GTGAAGTCATTGGTGGAGCATACGATCTTTTATCAACCAATGAAGCAATTGTAAAACATT
GGTCAGTCTATAATGGTCGTGTTTTATATGGTTTCATTTTAATTCATGGTGCTGGTTTAG
ATTATGTTTTCAATAAAGTTAATGGTTTAGGTGATATGGATGCAAATTGTAGATTACCAA
ATACTTATATTGGCAATTACGTTTGGTATGATCTAAATAAAAATGGTCTTCAAGATCCAA
ATGAAAAAGGAATGGCAAATATTACTGTTCAATTATTTAGTGCCGCTAATTCAACATTCA
TTAATTCAACTCTAACCGATTCCTCTGGTAATTACAATTTCCAAGTCATTTCAGAGTTTA
AATATAGAGTTCATTTCGTTGCTCCAAAAGGTTTCACTTATTCTCCTATCGTTACTGTTA
GTAGTGATCCTAATGATAAAAGAGATTTGGAAAAAATCAATAGTTTACCTGATTCAAAAG
GTGACGCATATTTCTTTGCTAATGGTAATGGTNAAAATACTCAAGA

>SHK246P.Seq
CTGTTGGCCTACTGGGTTGATGCTGATTCTTATCCAATTAATTCATATACAACGGGTCCT
GATGGATACTATAAATTCGATGATTTCTCATTTGGTAAATATATTATAACATTTAGCGGT
GTACCAGATTTAATCTATCAATTCTATAAACCAGATGATCAACAACATTTAAATCATTCC
ACACTTTCAAATATAACAATTTGGTCACCAGATAATCCAATGGTTGTAAATGCAACACTC
AGTGATCATGTCAACGCTCAATATATTCTTAGAGAACAAAATAAAGGTATTATTAGAGTG
ATCACTTATGCAATTGGAGGTAAGGTTATACCAGATTTTAAAAACACAACATATAAGGAT
AGTGGTTACGCGGGTGGTGCTGTTATAGTTCAATTATACCGTAACAATTCAATAGCAACA
GATCTTCGTGGTAATCCAATACCATCGGTATTGACCAATGTATTGACTGGTGAATATCTT
TTCGATAATGTACCAATCTTAGAGGGTTATCAAGTAATGTTTTCAAGTCCACCACCAGGT
TGGATTTTTGAAAAGTATAGAATCACTCAAACCCCATTCATTCAACTTGATCTTTTACCA
TCATTCAATTTACCAAAATCAAATCCAA----------GAGAGTGCTGGTGTTTGTGGTG
GGTTAATTGGTACAAATCCCAATTTCAATTGGTACAATGATTGAACAAGGACCAGGTGGT
GGTGAATTTTTCGATGACAATTTTAGTGATCGTGATTGGCAACATGATGAAACCACTTGG
GGTTCTTCATATTATTTACCAGGTAGTGGTGAAGTCATTGGTGGAGCATACGATCTTTTA
TCAACCAATGAAGCAATTGTAAAACATTGGTCAGTCTATAATGGTCGTGTTTTATATGGT
TTCATTTTAATTCATGGTGCTGGTTTAGATTATGTTTTCAATAAAGTTAATGGTTTAGGT
GATATGGATGCAAATTGTAGATTACCAAATACTTATATTGGCAATTACGTTTGGTATGAT
CTAAATAAAAATGGTCTTCAAGATCCAAATGAAAAAGGAATGGCAAATATTACTGTTCAA
TTATTTAGTGCCGCTAATTCAACATTCATTAATTCAACTCTAACCGATTCCTCTGGTAAT
TACAATTTCCAAGTCATTTCAGAGTTTAAATATAGAGTTCATTTCGTTGCTCCAAAAGGT
TTCACTTATTCTCCTATCGTTACTGTTAGTAGTGATCCTAATGATAAAAGAGATTTGGAA
AAAATCAATAGTTTACCTGATTCAAAAGGTGACGCATATTTCTTTGCTAATGGTAATGGT
NAAAATACTCAAGA