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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK204
Library SH
(Link to library)
Clone ID SHK204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHK204P
(Link to Original site)
Representative DNA sequence 
>SHK204 (SHK204Q) /CSM/SH/SHK2-A/SHK204Q.Seq.d/
ACTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAAC
ATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTT
ATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAG
TTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTG
ATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATA
CCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAG
GATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTT
TGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGA
GAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATG
CTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATATT
ACCATTCXXXXXXXXXXTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAA
TATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATT
GCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCA
GGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATT
TTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCA
TTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCT
AAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGAT
TTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGAT
TAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTNTAAATTAAACCTAAACCAA
ATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTAT
CATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACA
AATAAATAAATAAATAAAAAAAAAGCAAATAATTANCTCAATTATTTTTTAAATTNT
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGKYYH---

---SLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTISYSENKSSGFP
NEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHAAEIAKHY
SFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnxklnlnqihq
siik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannxlnyflnx
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxltrn**lvkx*n*ni*lffylflfigfyllnrivi**tmkgrrqk*pksdvmik
lfpff*iqiielmqhwkrtlmesfilmllifhtridfviipmififyqkshpfhlspq*e
dplishitilvqvfmve*nl*i*qtkl*hhtisi*tssp*eynqavei*l*iqaqe*fim
lhikleiyqinqqsmtkgniti---

---*fnl*cnql**naki*llqy*iqyqylc*wsilycsnfpi*i*inn*l**k*viris
k*nvyryccnynifsinflcy*ntg*kiy*reksqksi*is**sts*ts*etcc*nr*tl
fiwl*krsktk*klfl*frkeii*tpth*mlfqrty*lntiskfksnniqx*ikpkpnsp
iynqiinlylvivfvlvsshlqylstifffyf*yi*nk*ink*kksk*lxqlffkx

Frame B:
llaywx*paisn**xneiktfnyffiyfyl*vfic*igllsnkq*kagdknnqnpm**ss
yfhsfksk**n*cntgkgh*wkvlf*cc*fsiqg*tl*lyl*ylfftrnpipsicphnrr
ir*fhi*lslykclw*nktfeyskqncntiqyqfrpvhhenttrlwrfnykfrlksnl*c
fisnwrytk*tnnr*preilpf---

---SLTCNVTNYDEMLKYNYSNTKFNISISVDGQYFIAQIFQFKYESTISYSENKSSGFP
NEMYIGIVAIIIFLALIFFAIKTQVEKYIEERRARKAFRSVDNLRLKLREKHAAEIAKHY
SFGYESAPKPNKSYFYDLGKKLSRLPLIRCCFKEHTD*ilfpnsnpiisnxklnlnqihq
siik*siyil*lflflyhlifniylqffsftsnifktnk*inkkkannxlnyflnx

Frame C:
CWPTGIDPQLVISKXMKLKHLTIFLFIFIYRFLFVKSDCYLINNERPETKITKIRCDDQV
ISILLNPNNRTDATLEKDTDGKFYFDVVNFPYKDRLCDYTYDIYFLPEIPSLPSVPTIGG
SVNFTYNYPCTSVYGRIKPLNIANKIVTPYNINLDQFTMRIQPGCGDLIINSGSRVIYNA
SYQTGDIPNKPTIDDQGKYYH---

---v*pvm*ptmmkc*nittpilnsisvsllmvntlllkfsnlnmnqqlvivkishqdfq
mkcisvllql*yf*h*fslllkhrlknilkreepekhldqliiyvlnfvrnmllkslnii
hlvmkalqnqikvismi*ernyldshsldvvsknilikyyfqiqiq*ypixn*t*tkftn
l*snnqfiscncfcsciisssisiynfflllliylkqink*ikkkqiixsiif*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK204 (SHK204Q) /CSM/SH/SHK2-A/SHK204Q.Seq.d/                       2171   0.0
SHL812 (SHL812Q) /CSM/SH/SHL8-A/SHL812Q.Seq.d/                       1213   0.0
SHL593 (SHL593Q) /CSM/SH/SHL5-D/SHL593Q.Seq.d/                       1213   0.0
SHL342 (SHL342Q) /CSM/SH/SHL3-B/SHL342Q.Seq.d/                       1213   0.0
SHK837 (SHK837Q) /CSM/SH/SHK8-B/SHK837Q.Seq.d/                       1213   0.0
SHK774 (SHK774Q) /CSM/SH/SHK7-D/SHK774Q.Seq.d/                       1213   0.0
SHK745 (SHK745Q) /CSM/SH/SHK7-B/SHK745Q.Seq.d/                       1213   0.0
SHK629 (SHK629Q) /CSM/SH/SHK6-B/SHK629Q.Seq.d/                       1213   0.0
SHK166 (SHK166Q) /CSM/SH/SHK1-C/SHK166Q.Seq.d/                       1213   0.0
SHJ869 (SHJ869Q) /CSM/SH/SHJ8-C/SHJ869Q.Seq.d/                       1213   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strainAX4, complete sequence.   200   1e-82  12
AZ687404|AZ687404.1 ENTIV16TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ532160|AZ532160.1 ENTCE42TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
BH150005|BH150005.1 ENTQN09TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ551491|AZ551491.1 ENTFT25TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AZ672938|AZ672938.1 ENTMM06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.10   2
AC122168|AC122168.14 Medicago truncatula clone mth2-4o4, complete sequence.    42   0.52   6
DU571553|DU571553.1 OO__Ba0057P22.f OO__Ba Oryza officinalis genomic clone OO__Ba0057P22 5', genomic survey sequence.    48   0.53   1
CZ115922|CZ115922.1 OA_BBa0001A09.f OA_BBa Oryza alta genomic clone OA_BBa0001A09 5', genomic survey sequence.    48   0.53   1
AY747604|AY747604.1 Triticum aestivum cultivar Triple Dirk C line VRN-B1 (VRN-B1) gene, complete cds.    48   0.53   1
dna update 2006. 6. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...   348   2e-94
FJ374968_1(FJ374968|pid:none) Dictyostelium discoideum strain QS...   348   2e-94
FJ374973_1(FJ374973|pid:none) Dictyostelium discoideum strain QS...   348   2e-94
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...   348   2e-94
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   246   1e-63
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   246   1e-63
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...   246   2e-63
FJ374919_1(FJ374919|pid:none) Dictyostelium discoideum strain QS...   246   2e-63
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   244   4e-63
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   243   6e-63
protein update 2009. 5.29
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.08  top: 0.37  tms: 0.13  mit: 0.26  mip: 0.06
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SHK204 is end
5' end seq. ID SHK204F
5' end seq. 
>SHK204F.Seq
ACTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAAC
ATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTT
ATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAG
TTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTG
ATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATA
CCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAG
GATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTT
TGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGA
GAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATG
CTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATATT
ACCATTCNNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID SHK204Z
3' end seq. 
>SHK204Z.Seq
NNNNNNNNNNTAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAATATAACT
ACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATTGCTCAAA
TTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCAGGATTTC
CAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATTTTCTTTG
CTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCATTTAGAT
CAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCTAAACATT
ATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGATTTAGGAA
AGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGATTAAATAC
TATTTCCAAATTCAAATCCAATAATATCCAATTNTAAATTAAACCTAAACCAAATTCACC
AATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTATCATCTCA
TCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACAAATAAAT
AAATAAATAAAAAAAAAGCAAATAATTANCTCAATTATTTTTTAAATTNT
Length of 3' end seq. 710
Connected seq. ID SHK204P
Connected seq. 
>SHK204P.Seq
ACTGTTGGCCTACTGGNATTGACCCGCAATTAGTAATTAGTAAAGNAATGAAATTAAAAC
ATTTAACTATTTTTTTATTTATTTTTATTTATAGGTTTTTATTTGTTAAATCGGATTGTT
ATCTAATAAACAATGAAAGGCCGGAGACAAAAATAACCAAAATCCGATGTGATGATCAAG
TTATTTCCATTCTTTTAAATCCAAATAATAGAACTGATGCAACACTGGAAAAGGACACTG
ATGGAAAGTTTTATTTTGATGTTGTTAATTTTCCATACAAGGATAGACTTTGTGATTATA
CCTATGATATTTATTTTTTACCAGAAATCCCATCCCTTCCATCTGTCCCCACAATAGGAG
GATCCGTTAATTTCACATATAACTATCCTTGTACAAGTGTTTATGGTAGAATAAAACCTT
TGAATATAGCAAACAAAATTGTAACACCATACAATATCAATTTAGACCAGTTCACCATGA
GAATACAACCAGGCTGTGGAGATTTAATTATAAATTCAGGCTCAAGAGTAATTTATAATG
CTTCATATCAAACTGGAGATATACCAAATAAACCAACAATCGATGACCAAGGGAAATATT
ACCATTC----------TAGTTTAACCTGTAATGTAACCAACTATGATGAAATGCTAAAA
TATAACTACTCCAATACTAAATTCAATATCAGTATCTCTGTTGATGGTCAATACTTTATT
GCTCAAATTTTCCAATTTAAATATGAATCAACAATTAGTTATAGTGAAAATAAGTCATCA
GGATTTCCAAATGAAATGTATATCGGTATTGTTGCAATTATAATATTTTTAGCATTAATT
TTCTTTGCTATTAAAACACAGGTTGAAAAATATATTGAAGAGAGAAGAGCCAGAAAAGCA
TTTAGATCAGTTGATAATCTACGTCTTAAACTTCGTGAGAAACATGCTGCTGAAATCGCT
AAACATTATTCATTTGGTTATGAAAGCGCTCCAAAACCAAATAAAAGTTATTTCTATGAT
TTAGGAAAGAAATTATCTAGACTCCCACTCATTAGATGTTGTTTCAAAGAACATACTGAT
TAAATACTATTTCCAAATTCAAATCCAATAATATCCAATTNTAAATTAAACCTAAACCAA
ATTCACCAATCTATAATCAAATAATCAATTTATATCTTGTAATTGTTTTTGTTCTTGTAT
CATCTCATCTTCAATATCTATCTACAATTTTTTTCTTTTACTTCTAATATATTTAAAACA
AATAAATAAATAAATAAAAAAAAAGCAAATAATTANCTCAATTATTTTTTAAATTNT
Length of connected seq. 1307
Full length Seq ID -
Full length Seq. -
Length of full length seq. -