SHK190
Library SH
(Link to library)
Clone ID SHK190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHK190P
(Link to Original site)
Representative DNA sequence
>SHK190 (SHK190Q) /CSM/SH/SHK1-D/SHK190Q.Seq.d/
ACTGTTGGCCTACTGGNATATTAATATATTAATATTAATAAAATGAAAATATTATATTCA
TTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATAT
GATCAACGTATTTTGGCATTAAAAGGNAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTXXXXXXXXXXTCCA
GGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTT
GGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCA
TTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCT
TTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGT
CTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTT
TGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATC
ACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCA
AATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTT
GCATTCTTCCAAGCTGGTTCTTCTATTACAATGAGAAATGCTGATCCAACTCATCCAAAT
ACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCT
TCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAA
ATAATAAAAAAATATAAATAAATAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*KXKCYLDSNKNAL
YDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYF
ETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISV
DLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAG---

---PGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQL
KGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPG
ISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADP
THPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSLVLFQKNKIIKKYK*ik


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxy*yininkmkilyslllissiilntvlnissqvydqrilalkgkmlfrfk*kci
v**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrlll
*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n*c
*fglc*ansttnsttysttysttntstiyw*crrw---

---sr*w*fl**s*nrss*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*tt
krllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*tw
yfrnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcnsccilpswffyynekc*s
nsskyk**cflinc**clchffyff*cwwllf*wlfigiipkk*nnkki*inkk

Frame B:
llaywxinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*KXKCYLDSNKNAL
YDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYF
ETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISV
DLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAG---

---PGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQL
KGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPG
ISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADP
THPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFNGCSLVLFQKNKIIKKYK*ik

Frame C:
cwptgiliy*y**neniifiiinikynfkycikyfitsi*styfgikrxnvi*iqikmhc
mmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkiitl
kpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlylqlelvl
iwvmlsklnhqlnhllnhllnhqhlhhllvvpsl---

---qvmvisliiikqvfmtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*
kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlv
fqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*fllhssklvlllq*emliq
liqiqivmlsyqllimfmsllllllmlvviilmvvhwyyskkik**knink*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHK190 (SHK190Q) /CSM/SH/SHK1-D/SHK190Q.Seq.d/ 2403 0.0
SHL873 (SHL873Q) /CSM/SH/SHL8-D/SHL873Q.Seq.d/ 1287 0.0
SHL749 (SHL749Q) /CSM/SH/SHL7-C/SHL749Q.Seq.d/ 1287 0.0
SHL724 (SHL724Q) /CSM/SH/SHL7-A/SHL724Q.Seq.d/ 1287 0.0
SHL693 (SHL693Q) /CSM/SH/SHL6-D/SHL693Q.Seq.d/ 1287 0.0
SHL487 (SHL487Q) /CSM/SH/SHL4-D/SHL487Q.Seq.d/ 1287 0.0
SHL441 (SHL441Q) /CSM/SH/SHL4-B/SHL441Q.Seq.d/ 1287 0.0
SHL417 (SHL417Q) /CSM/SH/SHL4-A/SHL417Q.Seq.d/ 1287 0.0
SHL232 (SHL232Q) /CSM/SH/SHL2-B/SHL232Q.Seq.d/ 1287 0.0
SHL215 (SHL215Q) /CSM/SH/SHL2-A/SHL215Q.Seq.d/ 1287 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 62 4e-05 1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds. 62 4e-05 1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 62 4e-05 1
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 4e-05 3
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 32 6e-04 3
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 58 6e-04 1
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt]. 58 6e-04 1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 58 6e-04 1
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 0.002 3
DT775356|DT775356.1 124719991 TH1 Tribolium castaneum cDNA clone 3C7 3', mRNA sequence. 54 0.009 1
dna update 2006. 6. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 69 3e-10
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 63 2e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 59 4e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 59 4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 53 3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 53 3e-05
protein update 2009. 5.29
PSORT

psg: 0.49 gvh: 0.28 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SHK190 is cyt

5' end seq. ID SHK190F
5' end seq.
>SHK190F.Seq
ACTGTTGGCCTACTGGNATATTAATATATTAATATTAATAAAATGAAAATATTATATTCA
TTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATAT
GATCAACGTATTTTGGCATTAAAAGGNAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTNNNNNNNNNN
Length of 5' end seq. 656
3' end seq. ID SHK190Z
3' end seq.
>SHK190Z.Seq
NNNNNNNNNNTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACT
ATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCG
ATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAAC
TAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTG
GTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATC
GTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTG
GTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAA
CTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATT
GTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCTATTACAATGAGAAATGCTGATC
CAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCA
CTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTAT
TCCAAAAAAATAAAATAATAAAAAAATATAAATAAATAAAAAA
Length of 3' end seq. 703
Connected seq. ID SHK190P
Connected seq.
>SHK190P.Seq
ACTGTTGGCCTACTGGNATATTAATATATTAATATTAATAAAATGAAAATATTATATTCA
TTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATAT
GATCAACGTATTTTGGCATTAAAAGGNAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGT----------TCCA
GGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTT
GGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCA
TTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCT
TTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGT
CTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTT
TGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATC
ACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCA
AATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTT
GCATTCTTCCAAGCTGGTTCTTCTATTACAATGAGAAATGCTGATCCAACTCATCCAAAT
ACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCT
TCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATAAA
ATAATAAAAAAATATAAATAAATAAAAAA
Length of connected seq. 1339
Full length Seq ID -
Full length Seq. -
Length of full length seq. -