>SHK151 (SHK151Q) /CSM/SH/SHK1-C/SHK151Q.Seq.d/
XXXXXXXXXXATGCCTGCTTTAAAAATTAATTTTTCAAATTTTTTTCAGTCTTTTTCGCA
ATAATTTCCGATAACATCACAATATGGGTAAGCCAAATGGTTTAAAAACAGCTAGAAAGC
TTAGAAATCACAGAAGAGTCCAAAGATGGAACGATAAACTCTACAAAAAGGCTCATTTCG
GTACTGCTNTTAAAGCCAATCCATTCGGTGGTGCCTCCCATGCCTCTGGTATCGTCGTAA
GCAGACTTGGTATCGAAGCCAAACAACCAAATTCTGCCATCCGTAAATGTGTCAGAGTTC
AATTAAAAAAGAACGGTAAAAAGATCACTGCTTTCGTTCCAAACGATGGTTGTTTAAATT
ACATCCAAGAAAATGACAAAGTTTTAGTTGCTGGTCTCGGTCGTTCAGGTCACTCTGTCG
GTGATATTCCAGGCGTCCGTTTCAAGGTTGTCAAAGTTTCATCCGTCTCCCTCATTGCCA
TCTACCGTGGTATCAAAGATAAACCAAACGTATAAATAAATAT

---cll*klifqiffslfrnnfr*HHNMGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFG
TAXKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNY
IQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKPNV*in

Frame A:
---cll*klifqiffslfrnnfr*HHNMGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFG
TAXKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNY
IQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKPNV*in


Frame B:
---acfkn*ffkffsvffaiisdnitiwvsqmv*kqlesleiteeskdgtinstkrlisv
lllkpihsvvppmplvss*adlvskpnnqilpsvnvsefn*krtvkrsllsfqtmvv*it
skkmtkf*llvsvvqvtlsvifqasvsrlskfhpspslpstvvskinqtyk*i


Frame C:
---palkinfsnffqsfsq*fpitsqyg*akwfkns*ka*ksqkspkmer*tlqkgsfry
cx*sqsirwclpclwyrrkqtwyrsqttkfchp*mcqssikker*kdhcfrskrwlfklh
prk*qsfscwsrsfrslcr*ysrrpfqgcqsfirlphchlpwyqr*tkrinky

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK151 (SHK151Q) /CSM/SH/SHK1-C/SHK151Q.Seq.d/                        969   0.0
VFN688 (VFN688Q) /CSM/VF/VFN6-D/VFN688Q.Seq.d/                        918   0.0
VFF362 (VFF362Q) /CSM/VF/VFF3-C/VFF362Q.Seq.d/                        918   0.0
VFF480 (VFF480Q) /CSM/VF/VFF4-D/VFF480Q.Seq.d/                        916   0.0
VHD577 (VHD577Q) /CSM/VH/VHD5-D/VHD577Q.Seq.d/                        906   0.0
SSJ616 (SSJ616Q) /CSM/SS/SSJ6-A/SSJ616Q.Seq.d/                        906   0.0
VHJ843 (VHJ843Q) /CSM/VH/VHJ8-B/VHJ843Q.Seq.d/                        902   0.0
SHA231 (SHA231Q) /CSM/SH/SHA2-B/SHA231Q.Seq.d/                        882   0.0
VSJ845 (VSJ845Q) /CSM/VS/VSJ8-B/VSJ845Q.Seq.d/                        878   0.0
VSH652 (VSH652Q) /CSM/VS/VSH6-C/VSH652Q.Seq.d/                        666   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114265|AC114265.2 Dictyostelium discoideum chromosome 2 map 4520461-4544940 strainAX4, complete sequence.   509   0.0    5
CN815814|CN815814.1 HRO4510_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena sativa cDNA clone HRO4510_G07_M14, mRNA sequence.    96   1e-36  2
CV243823|CV243823.1 WS0252.B21_P05 PT-MB-N-A-15 Populus balsamifera subsp. trichocarpa cDNA clone WS0252_P05 3', mRNA sequence.   100   5e-36  3
DN952812|DN952812.1 A10-SC-P5 Adult salivary gland cDNA library XWJRABMK Stomoxys calcitrans cDNA, mRNA sequence.    82   1e-32  3
CO720614|CO720614.1 tai47c11.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.    96   5e-28  3
CO539686|CO539686.1 tai21b09.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.    96   5e-28  3
CO720288|CO720288.1 tai41h04.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.    96   2e-27  3
CO720635|CO720635.1 tai47h04.y1 HyEch JUMY T1 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.    96   2e-27  3
DN135851|DN135851.1 tam61d08.y2 Hydra_EST_HyEch_JUMY_T2 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.   107   3e-27  2
DN136068|DN136068.1 tam64e09.y2 Hydra_EST_HyEch_JUMY_T2 Hydractinia echinata cDNA 5' similar to SW:RS23_HUMAN P39028 40S RIBOSOMAL PROTEIN S23. [1] ;, mRNA sequence.   107   3e-27  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114265_6(AC114265|pid:none) Dictyostelium discoideum chromosom...   243   2e-63
BT058308_1(BT058308|pid:none) Salmo salar clone Contig3653 40S r...   224   7e-58
AB258536_7(AB258536|pid:none) Oncorhynchus mykiss Onmy-LDA gene ...   222   4e-57
BC088894_1(BC088894|pid:none) Xenopus tropicalis ribosomal prote...   221   6e-57
AB291576_1(AB291576|pid:none) Solea senegalensis rpS23 mRNA for ...   221   8e-57
(Q90YQ1) RecName: Full=40S ribosomal protein S23;  &AF402831_1(A...   219   3e-56
(P62266) RecName: Full=40S ribosomal protein S23;  &(P62267) Rec...   219   4e-56
BC077634_1(BC077634|pid:none) Xenopus laevis MGC86316 protein, m...   219   4e-56
EU124946_1(EU124946|pid:none) Arenicola marina ribosomal protein...   218   7e-56
AK010667_1(AK010667|pid:none) Mus musculus ES cells cDNA, RIKEN ...   218   9e-56

 psg: 0.39  gvh: 0.36  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for SHK151 is cyt

>SHK151Z.Seq
NNNNNNNNNNATGCCTGCTTTAAAAATTAATTTTTCAAATTTTTTTCAGTCTTTTTCGCA
ATAATTTCCGATAACATCACAATATGGGTAAGCCAAATGGTTTAAAAACAGCTAGAAAGC
TTAGAAATCACAGAAGAGTCCAAAGATGGAACGATAAACTCTACAAAAAGGCTCATTTCG
GTACTGCTNTTAAAGCCAATCCATTCGGTGGTGCCTCCCATGCCTCTGGTATCGTCGTAA
GCAGACTTGGTATCGAAGCCAAACAACCAAATTCTGCCATCCGTAAATGTGTCAGAGTTC
AATTAAAAAAGAACGGTAAAAAGATCACTGCTTTCGTTCCAAACGATGGTTGTTTAAATT
ACATCCAAGAAAATGACAAAGTTTTAGTTGCTGGTCTCGGTCGTTCAGGTCACTCTGTCG
GTGATATTCCAGGCGTCCGTTTCAAGGTTGTCAAAGTTTCATCCGTCTCCCTCATTGCCA
TCTACCGTGGTATCAAAGATAAACCAAACGTATAAATAAATAT