SHK144 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHK144
Library	SH (Link to library)
Clone ID	SHK144 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16411-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHK1-B/SHK144Q.Seq.d/
Representative seq. ID	SHK144P (Link to Original site)
Representative DNA sequence	>SHK144 (SHK144Q) /CSM/SH/SHK1-B/SHK144Q.Seq.d/ CCTACTGGNAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAAAAATTTTTTA TTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATAT ATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACT GATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTA CAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAA TCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTA TTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTT TTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCA GTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGAT GCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAG ATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTXXXXXXXX XXTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAA AGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGA TGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGG TAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACA AGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAA TCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTAT TACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGAT TTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAG ACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGG TGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTT TGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAA AACTATTAAATAAAAAAAAATAAAAAATAAATAAAATNCTATNCTGTTTTTTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	ptgnk*lkfayikxnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFT DKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRL LAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGD AGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG--- ---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKkkiknknxxlff*
Translated Amino Acid sequence (All Frames)	Frame A: ptgnk*lkfayikxnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFT DKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRL LAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGD AGATKEQVIQAVKEIRGNKKITSKTAESTYEALSKYG--- ---lkpseedhtvyclmklkklinkfgmfsykywmkvvlpmvkvepisqmllslpq ivvntslvnkqtkkvvttlyhklvkikslmklenisvqsfivsmilsllhvkktfi vlllfndpskrdkikiclrfqtmliqlsmlhmiqslvvdhnvtlkrilslnlvns slvvnkkikvllsmkkiiistlilinnnnnvqllqpknkkllnkkkkinkxlxcff k Frame B: llxinnnnlhikxikifyfltyyflinhiifqhtyiyiyfnkikkchliqknll ikqiqfcelknwqeknqmynhqyiwllhymmkiiqnlylkklvemyqklmlvlkdy pnnlfkiqyhlkflqihyfykfdqqhvikrimviliqltiywdywmieiyyqywem lvqpknklykqlkrleeikrlqvklqnlpmkhyqnmv--- ---nsrqkktiqcsiv*skssstslecsltsigrssyrwsrnrrflkccyhydlk frsihpwtskqrrwqlfitslrshsktfpsrvfkssrynclysierkps* yyyssikirrkeirrskyvfkdfkrcfrfnyqccisnlwwtietlhkeycht*th pwwikrksrcccqkrsssqlyyrfktttttssfsnqktknyikknkkikxyxvfl k Frame C: ywxiiikiciykxkkffifckhiifckiiffnihiyiyifkiknknvisrriy* nkynfvknsrigkrkikctistntfgcyiikrfskiyikswwrctkncwfkii sqttcskssttnfskfiiftsfkisstsskewfsfsspfnigiigryiisigrc wcnqrtsytssrdrkkdykncriylsiikiw--- ---TEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSN LGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHS IITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLI LGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKkkiknknxxlff*
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/ 1283 0.0 VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/ 1283 0.0 SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/ 1283 0.0 SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/ 1283 0.0 SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/ 1283 0.0 SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/ 1283 0.0 SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/ 1283 0.0 SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1283 0.0 SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/ 1283 0.0 SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/ 1283 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BQ862449\|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence. 80 2e-12 2 BH165696\|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH164508\|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH163900\|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH163033\|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH161826\|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH159060\|BH159060.1 ENTTR44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH158420\|BH158420.1 ENTRY44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH156349\|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1 BH149144\|BH149144.1 ENTQQ09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 6e-07 1
dna update	2006. 5.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AJ970534_1(AJ970534\|pid:none) Triticum turgidum subsp. durum par... 216 1e-54 AY764155_1(AY764155\|pid:none) Vitis vinifera heat shock protein ... 216 2e-54 AJ970533_1(AJ970533\|pid:none) Triticum turgidum subsp. durum par... 216 2e-54 (Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 216 2e-54 AF097363_1(AF097363\|pid:none) Triticum aestivum heat shock prote... 215 3e-54 AJ970535_1(AJ970535\|pid:none) Triticum turgidum subsp. durum par... 214 4e-54 L35272_1(L35272\|pid:none) Glycine max heat shock protein (SB100)... 214 6e-54 CP000422_1040(CP000422\|pid:none) Pediococcus pentosaceus ATCC 25... 214 6e-54 AF083327_1(AF083327\|pid:none) Zea mays 101 kDa heat shock protei... 214 7e-54 BT066296_1(BT066296\|pid:none) Zea mays full-length cDNA clone ZM... 214 7e-54
protein update	2009. 5.29
PSORT	psg: 0.63 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 44.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for SHK144 is nuc
5' end seq. ID	SHK144F
5' end seq.	>SHK144F.Seq CCTACTGGNAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAAAAATTTTTTA TTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATAT ATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACT GATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTA CAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAA TCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTA TTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTT TTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCA GTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGAT GCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAG ATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTNNNNNNNN NN
Length of 5' end seq.	662
3' end seq. ID	SHK144Z
3' end seq.	>SHK144Z.Seq NNNNNNNNNNTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAA GTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGT CTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCA AATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCT TTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAG TTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCAT AGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCT TTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTT GGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTC ATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCAT CTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAA AAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATNCTATNCTGTTTTTT TAAAA
Length of 3' end seq.	725
Connected seq. ID	SHK144P
Connected seq.	>SHK144P.Seq CCTACTGGNAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATAAAAATTTTTTA TTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATAT ATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACT GATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTA CAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAA TCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTA TTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTT TTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCA GTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGAT GCTGGTGCAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAG ATTACAAGTAAAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTT-------- --TAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAA AGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGA TGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGG TAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACA AGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAA TCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTAT TACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGAT TTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAG ACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGG TGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTT TGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAA AACTATTAAATAAAAAAAAATAAAAAATAAATAAAATNCTATNCTGTTTTTTTAAAA
Length of connected seq.	1367
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas