NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHK135
Library SH
(Link to library)
Clone ID SHK135
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12682-1
Original site URL
Representative seq. ID SHK135P
(Link to Original site)
Representative DNA sequence 
>SHK135 (SHK135Q) /CSM/SH/SHK1-B/SHK135Q.Seq.d/
ATATCAGTTCTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATAATAATCACTA
TCAAGGGAATAGGTATATACTATAGAAGTTTCATTTCTGGTTACCCGATTTGGTGCCGAA
TAAACTATAATAAATAATGAAAATAAAAGTATTAAAAAAAAATACATTTTATGAATCATT
TCATGTGTTCAAAAAAAAAAATAAAAAAAAAAAAAAATTAAAAAAAAAAXXXXXXXXXXA
TATCAGTTTTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATAATAATCACTAT
CAANGGAATAGGTATATACTANAGAAGTTTCANTTCTGGTTACCCGATTTGGTGCCNAAT
TAACTATAATAAATAATTAAAATAAAAGTATTAAAAAAAAATACNTTTTAGAATCTTTCA
GNGTTCAAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
yqflr**hldt*qneynnhyqgnryil*kfhfwlpdlvpnkl**IMKIKVLKKNTFYESF
HVFKKKNKKKKKLKKK---

---ISVFKVVAFRYITKRV**slsxe*vytxevsxlvtrfgaxltiinn*nksikkkyxl
esfxvqkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
isvlkvvafryitkrv**slsre*vytievsflvtrfgae*tiinnenksikkkyil*ii
scvqkkk*kkkkikkk---

---ISVFKVVAFRYITKRV**slsxe*vytxevsxlvtrfgaxltiinn*nksikkkyxl
esfxvqkkk

Frame B:
yqflr**hldt*qneynnhyqgnryil*kfhfwlpdlvpnkl**IMKIKVLKKNTFYESF
HVFKKKNKKKKKLKKK---

---yqflr**hldt*qneynnhyqxnryilxkfxfwlpdlvpn*l**iikikvlkkntf*
nlsxfkkk

Frame C:
iss*gssi*ihnktsiiitikgigiyyrsfisgypiwcrinynk**k*ky*kkihfmnhf
mcskkkikkkkn*kk---

---isf*gssi*ihnktsiiitixgigiyxrsfxsgypiwcxinynk*lk*ky*kkixfr
ifqxskkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHK135 (SHK135Q) /CSM/SH/SHK1-B/SHK135Q.Seq.d/                        323   1e-87
SHI812 (SHI812Q) /CSM/SH/SHI8-A/SHI812Q.Seq.d/                        323   1e-87
SHI421 (SHI421Q) /CSM/SH/SHI4-A/SHI421Q.Seq.d/                        323   1e-87
SHA114 (SHA114Q) /CSM/SH/SHA1-A/SHA114Q.Seq.d/                        323   1e-87
CHE686 (CHE686Q) /CSM/CH/CHE6-D/CHE686Q.Seq.d/                        323   1e-87
SHJ839 (SHJ839Q) /CSM/SH/SHJ8-B/SHJ839Q.Seq.d/                        321   5e-87
SHC671 (SHC671Q) /CSM/SH/SHC6-C/SHC671Q.Seq.d/                        321   5e-87
SHB106 (SHB106Q) /CSM/SH/SHB1-A/SHB106Q.Seq.d/                        315   3e-85
CHG455 (CHG455Q) /CSM/CH/CHG4-C/CHG455Q.Seq.d/                        315   3e-85
SHL682 (SHL682Q) /CSM/SH/SHL6-D/SHL682Q.Seq.d/                        311   5e-84
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.   303   6e-89  2
AC163318|AC163318.3 Bos taurus clone CH240-105B9, *** SEQUENCING IN PROGRESS ***, 43 unordered pieces.    44   0.023  2
BX323062|BX323062.10 Zebrafish DNA sequence from clone DKEYP-38H2 in linkage group 5.    50   0.043  1
AC155340|AC155340.1 Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH020D15, complete sequence.    38   0.080  3
AC186550|AC186550.1 Gallus gallus chromosome Z clone TAM32-52P23, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48   0.17   1
BH501239|BH501239.1 BOGDL15TR BOGD Brassica oleracea genomic clone BOGDL15, DNA sequence.    48   0.17   1
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    40   0.20   5
AC146171|AC146171.2 Pan troglodytes BAC clone RP43-24K1 from 7, complete sequence.    38   0.24   3
CL101818|CL101818.1 ISB1-39C15_Sp6.1 ISB1 Silurana tropicalis genomic clone ISB1-39C15, genomic survey sequence.    40   0.32   2
AC146025|AC146025.2 Pan troglodytes BAC clone RP43-119E9 from 7, complete sequence.    38   0.32   3
dna update 2006. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...    92   4e-18
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...    84   1e-15
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS...    84   1e-15
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS...    84   1e-15
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS...    84   1e-15
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS...    70   3e-11
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS...    70   3e-11
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS...    70   3e-11
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS...    70   3e-11
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS...    70   3e-11
protein update 2009. 5.29
PSORT 

 psg: 0.68  gvh: 0.27  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.41  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHK135 is nuc
5' end seq. ID SHK135F
5' end seq. 
>SHK135F.Seq
ATATCAGTTCTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATAATAATCACTA
TCAAGGGAATAGGTATATACTATAGAAGTTTCATTTCTGGTTACCCGATTTGGTGCCGAA
TAAACTATAATAAATAATGAAAATAAAAGTATTAAAAAAAAATACATTTTATGAATCATT
TCATGTGTTCAAAAAAAAAAATAAAAAAAAAAAAAAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 239
3' end seq. ID SHK135Z
3' end seq. 
>SHK135Z.Seq
NNNNNNNNNNATATCAGTTTTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATA
ATAATCACTATCAANGGAATAGGTATATACTANAGAAGTTTCANTTCTGGTTACCCGATT
TGGTGCCNAATTAACTATAATAAATAATTAAAATAAAAGTATTAAAAAAAAATACNTTTT
AGAATCTTTCAGNGTTCAAAAAAAAAAA
Length of 3' end seq. 208
Connected seq. ID SHK135P
Connected seq. 
>SHK135P.Seq
ATATCAGTTCTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATAATAATCACTA
TCAAGGGAATAGGTATATACTATAGAAGTTTCATTTCTGGTTACCCGATTTGGTGCCGAA
TAAACTATAATAAATAATGAAAATAAAAGTATTAAAAAAAAATACATTTTATGAATCATT
TCATGTGTTCAAAAAAAAAAATAAAAAAAAAAAAAAATTAAAAAAAAAA----------A
TATCAGTTTTTAAGGTAGTAGCATTTAGATACATAACAAAACGAGTATAATAATCACTAT
CAANGGAATAGGTATATACTANAGAAGTTTCANTTCTGGTTACCCGATTTGGTGCCNAAT
TAACTATAATAAATAATTAAAATAAAAGTATTAAAAAAAAATACNTTTTAGAATCTTTCA
GNGTTCAAAAAAAAAAA
Length of connected seq. 427
Full length Seq ID -
Full length Seq. -
Length of full length seq. -