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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHJ885
Library SH
(Link to library)
Clone ID SHJ885
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHJ885P
(Link to Original site)
Representative DNA sequence 
>SHJ885 (SHJ885Q) /CSM/SH/SHJ8-D/SHJ885Q.Seq.d/
CACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTT
TCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTA
AAAAAAAAAXXXXXXXXXXCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACA
AGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGA
TGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAA
AAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGA
CCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGA
TAAATTAAATCAAGAAAAAAATCAACAGTTATTAGAACAAGAACAAAATCAAAAATAATT
TAATCATTCTTTNCTTTTTAAAAAACTA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkkl
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgk**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*fnhsxlfkkl

Frame B:
tvgllxnnkftik*lfflfflfkv*iieiikinikkker*kk---

---reti*rns*fpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinsy*nknkiknnliilxflkn

Frame C:
llaywxiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---erlyeeihnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstvirtrtkskii*sffxf*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ885 (SHJ885Q) /CSM/SH/SHJ8-D/SHJ885Q.Seq.d/                        765   0.0
SHJ637 (SHJ637Q) /CSM/SH/SHJ6-B/SHJ637Q.Seq.d/                        765   0.0
SHG652 (SHG652Q) /CSM/SH/SHG6-C/SHG652Q.Seq.d/                        765   0.0
SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        765   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        765   0.0
SHA293 (SHA293Q) /CSM/SH/SHA2-D/SHA293Q.Seq.d/                        765   0.0
CHS117 (CHS117Q) /CSM/CH/CHS1-A/CHS117Q.Seq.d/                        765   0.0
CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/                        765   0.0
CHR581 (CHR581Q) /CSM/CH/CHR5-D/CHR581Q.Seq.d/                        765   0.0
CHI629 (CHI629Q) /CSM/CH/CHI6-B/CHI629Q.Seq.d/                        765   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   704   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   5e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   3e-04  9
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.002  11
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.020  4
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.024  2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.024  15
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.027  8
AX344564|AX344564.1 Sequence 15 from Patent WO0200932.             32   0.045  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.060  14
dna update 2006. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   274   5e-73
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.54
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   2.0
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.6
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.7
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ...    35   2.7
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.5
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   4.5
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   4.5
protein update 2009. 5.29
PSORT 

 psg: 0.24  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHJ885 is cyt
5' end seq. ID SHJ885F
5' end seq. 
>SHJ885F.Seq
CACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTT
TCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTA
AAAAAAAAANNNNNNNNNN
Length of 5' end seq. 139
3' end seq. ID SHJ885Z
3' end seq. 
>SHJ885Z.Seq
NNNNNNNNNNCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGCAGT
TCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTC
TCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGA
TGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTA
TGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATT
ACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTC
AAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACA
ACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGA
ATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTA
CTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAA
ACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAA
AAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAA
TCAAGAAAAAAATCAACAGTTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTC
TTTNCTTTTTAAAAAACTA
Length of 3' end seq. 799
Connected seq. ID SHJ885P
Connected seq. 
>SHJ885P.Seq
CACTGTTGGCCTACTGGNAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTT
TCTTTTTAAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTA
AAAAAAAAA----------CAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAA
TAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGC
TGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAA
TGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATAT
CGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGC
TGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGA
ACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACA
AGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGT
TATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGA
TGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAA
AAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGA
CCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGA
TAAATTAAATCAAGAAAAAAATCAACAGTTATTAGAACAAGAACAAAATCAAAAATAATT
TAATCATTCTTTNCTTTTTAAAAAACTA
Length of connected seq. 918
Full length Seq ID -
Full length Seq. -
Length of full length seq. -