>SHJ883 (SHJ883Q) /CSM/SH/SHJ8-D/SHJ883Q.Seq.d/
XXXXXXXXXXAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGGTGTNTANTTGAGTGATGTTGAAAAAGCTCAACTTGAA
T

---LKVIKEFQRQDQQKKQKIQQENDGVXLSDVEKAQLE

Frame A:
---t*syqrisktrstketknstrerwcxxe*c*ksst*


Frame B:
---LKVIKEFQRQDQQKKQKIQQENDGVXLSDVEKAQLE


Frame C:
---lklsknfkdkinkrnkkfnkrtmvxx*vmlkklnln

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ883 (SHJ883Q) /CSM/SH/SHJ8-D/SHJ883Q.Seq.d/                        208   1e-53
SHH356 (SHH356Q) /CSM/SH/SHH3-C/SHH356Q.Seq.d/                        208   1e-53
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        200   3e-51
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        200   3e-51
SSE796 (SSE796Q) /CSM/SS/SSE7-D/SSE796Q.Seq.d/                        200   3e-51
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        200   3e-51
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        200   3e-51
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        200   3e-51
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        200   3e-51
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        200   3e-51

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   200   5e-48  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.040  1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.040  1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.040  1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.040  1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.040  1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.040  1
AC152434|AC152434.3 Bos taurus clone CH240-5P17, *** SEQUENCING IN PROGRESS ***, 59 unordered pieces.    42   0.37   4
AJ496288|AJ496288.1 Bartonella tribocorum succinate dehydrogenase operon (partial), type IV secretion system operon, ubiH, int and korB genes and ORF1 DNA.    38   0.49   2
BE396460|BE396460.1 601289377F1 NIH_MGC_8 Homo sapiens cDNA clone IMAGE:3619698 5', mRNA sequence.    44   0.63   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    38   0.12

 psg: 0.34  gvh: 0.06  alm: 0.74  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SHJ883 is nuc

>SHJ883Z.Seq
NNNNNNNNNNAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGGTGTNTANTTGAGTGATGTTGAAAAAGCTCAACTTGAA
T