SHJ863
Library SH
(Link to library)
Clone ID SHJ863
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12151-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHJ863 (SHJ863Q) /CSM/SH/SHJ8-C/SHJ863Q.Seq.d/
XXXXXXXXXXTGTTNTCATCCCCCATTGAAATGNGATGANAAAAAACCCATGNNCCGTAG
ATTCATGTTCAAATTCCANGNGGGTGGGTCCATACCCCAAATGAATGTTGATGATAATAA
TGCNTGTACTGAAGATAAATGTACTCAAAATGGTGGTGTTACTCATACTCCAATTNGTTG
TGATGATTTAAATTCATGTACTGATGATTCATGTTCAAATTCANCCGGTTGTGTCCACAC
TCCAATTAATTGCGATGATAATAATGAATGTACTGNTGACTCATGTTCAAACTCAACTGG
CTGTTGTCACACCCCAATTTCATGTGATGATAATAATCCATGTACCGTAGATTCCTGTTC
AAATTCAACTGGTTGTTGTCACACTCCAATCAATGTTGATGATAATAATCCATGTACCGA
AGATAAATGTACTCAATCAGGTGGTGTAACTCATACTCCAATTGGATGTAATGATAATAA
TGCATGTACTGTAGATTCATGTTCAAATTCAACTGGTTGTACTCATACACCAATGAAATG
TGATGATAATAATCCATGTACAATTGACTCATGTTCAAATTCAACTGGTTGTGTCCATAC
CCCAATGAATTGCGACGATGGTAACTTCTGTACTCTTGATTCATGTTGTTCAACTGGTTG
TACTCATACACCAATTATTATTGATGACAATAACCCATGTACAGTCGACTCTTGTTGCAA
TTCAACCGGTGTCGTCCATACTCCAGTGGATTGTAATGATAACAATGTCCTTACTTGTGA
TTACTGCAGTATCAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---XHPPLKXDXKKPMXRRFMFKFXXGGSIPQMNVDDNNACTEDKCTQNGGVTHTPIXCD
DLNSCTDDSCSNSXGCVHTPINCDDNNECTXDSCSNSTGCCHTPISCDDNNPCTVDSCSN
STGCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGCTHTPMKCD
DNNPCTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPCTVDSCCNS
TGVVHTPVDCNDNNVLTCDYCSIK


Translated Amino Acid sequence (All Frames)
Frame A:
---vxiph*nxmxknpxxvdscsnsxxvgpypk*mlmiimxvlkinvlkmvvllilqxvv
mi*ihvlmihvqixpvvstlqliamiimnvlxthvqtqlavvtpqfhvmiiihvp*ipvq
iqlvvvtlqsmlmiiihvpkinvlnqvv*lilqldvmiimhvl*ihvqiqlvvlihq*nv
miiihvqlthvqiqlvvsipq*iatmvtsvllihvvqlvvlihqlllmtithvqstlvai
qpvssilqwivmitmsllvitavs


Frame B:
---xsspiemx*xkthxp*ihvqipxgwvhtpnec****cxy*r*myskwwcysysnxl*
*fkfmy**fmfkfxrlcphsn*lr****myx*lmfklnwllshpnfm****smyrrflfk
fnwllshsnqc****smyrr*mysirwcnsysnwm****cmycrfmfkfnwlysytnem*
***smyn*lmfkfnwlcpypnelrrw*llys*fmlfnwlysytnyy**q*pmysrlllqf
nrcrpyssgl***qcpyl*llqyq


Frame C:
---XHPPLKXDXKKPMXRRFMFKFXXGGSIPQMNVDDNNACTEDKCTQNGGVTHTPIXCD
DLNSCTDDSCSNSXGCVHTPINCDDNNECTXDSCSNSTGCCHTPISCDDNNPCTVDSCSN
STGCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGCTHTPMKCD
DNNPCTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPCTVDSCCNS
TGVVHTPVDCNDNNVLTCDYCSIK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ863 (SHJ863Q) /CSM/SH/SHJ8-C/SHJ863Q.Seq.d/ 1493 0.0
SHL392 (SHL392Q) /CSM/SH/SHL3-D/SHL392Q.Seq.d/ 1384 0.0
SHJ687 (SHJ687Q) /CSM/SH/SHJ6-D/SHJ687Q.Seq.d/ 1342 0.0
CFG520 (CFG520Q) /CSM/CF/CFG5-A/CFG520Q.Seq.d/ 1320 0.0
SHC883 (SHC883Q) /CSM/SH/SHC8-D/SHC883Q.Seq.d/ 1277 0.0
CHL693 (CHL693Q) /CSM/CH/CHL6-D/CHL693Q.Seq.d/ 1249 0.0
CHL417 (CHL417Q) /CSM/CH/CHL4-A/CHL417Q.Seq.d/ 1241 0.0
CHG260 (CHG260Q) /CSM/CH/CHG2-C/CHG260Q.Seq.d/ 1237 0.0
CHR658 (CHR658Q) /CSM/CH/CHR6-C/CHR658Q.Seq.d/ 1203 0.0
CHI627 (CHI627Q) /CSM/CH/CHI6-B/CHI627Q.Seq.d/ 1187 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 90 2e-25 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 64 6e-09 2
G37776|G37776.1 atp Plasmodium falciparum haploid Plasmodium falciparum STS genomic, sequence tagged site. 28 8e-05 5
AF134662|AF134662.1 Plasmodium falciparum strain UPV4 from Burkina Faso CG2 omega repeat (cg2) gene, partial cds. 36 1e-04 4
AF134664|AF134664.1 Plasmodium falciparum strain IVC17 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds. 36 2e-04 4
AF134659|AF134659.1 Plasmodium falciparum strain BEN6 from Benin CG2 omega repeat (cg2) gene, partial cds. 36 2e-04 4
AF134658|AF134658.1 Plasmodium falciparum strain SEN16 from Senegal CG2 omega repeat (cg2) gene, partial cds. 36 2e-04 4
AF134671|AF134671.1 Plasmodium falciparum strain TOG1 from Togo CG2 omega repeat (cg2) gene, partial cds. 36 2e-04 4
AF134670|AF134670.1 Plasmodium falciparum strain SEN10 from Senegal CG2 omega repeat (cg2) gene, partial cds. 36 2e-04 4
BX139987|BX139987.1 Danio rerio genomic clone DKEY-99E7, genomic survey sequence. 28 2e-04 6
dna update 2006. 5.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 489 e-137
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 489 e-137
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 329 5e-89
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 301 2e-80
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 270 5e-71
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 255 1e-66
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 142 1e-32
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 129 1e-28
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 127 3e-28
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 127 4e-28
protein update 2009. 5.29
PSORT

psg: 0.64 gvh: 0.46 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

20.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: plasma membrane
12.0 %: nuclear
8.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for SHJ863 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHJ863Z
3' end seq.
>SHJ863Z.Seq
NNNNNNNNNNTGTTNTCATCCCCCATTGAAATGNGATGANAAAAAACCCATGNNCCGTAG
ATTCATGTTCAAATTCCANGNGGGTGGGTCCATACCCCAAATGAATGTTGATGATAATAA
TGCNTGTACTGAAGATAAATGTACTCAAAATGGTGGTGTTACTCATACTCCAATTNGTTG
TGATGATTTAAATTCATGTACTGATGATTCATGTTCAAATTCANCCGGTTGTGTCCACAC
TCCAATTAATTGCGATGATAATAATGAATGTACTGNTGACTCATGTTCAAACTCAACTGG
CTGTTGTCACACCCCAATTTCATGTGATGATAATAATCCATGTACCGTAGATTCCTGTTC
AAATTCAACTGGTTGTTGTCACACTCCAATCAATGTTGATGATAATAATCCATGTACCGA
AGATAAATGTACTCAATCAGGTGGTGTAACTCATACTCCAATTGGATGTAATGATAATAA
TGCATGTACTGTAGATTCATGTTCAAATTCAACTGGTTGTACTCATACACCAATGAAATG
TGATGATAATAATCCATGTACAATTGACTCATGTTCAAATTCAACTGGTTGTGTCCATAC
CCCAATGAATTGCGACGATGGTAACTTCTGTACTCTTGATTCATGTTGTTCAACTGGTTG
TACTCATACACCAATTATTATTGATGACAATAACCCATGTACAGTCGACTCTTGTTGCAA
TTCAACCGGTGTCGTCCATACTCCAGTGGATTGTAATGATAACAATGTCCTTACTTGTGA
TTACTGCAGTATCAAA
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -