>SHJ850 (SHJ850Q) /CSM/SH/SHJ8-C/SHJ850Q.Seq.d/
ACTGTTGGCCTACTGGNATGGAATCTTCTCAAATAAATGTTTCTAGNATGGCCAGCTCAT
AAAATAATTTCATCTGGTAATACAAATGTATTTTATAGAGAATAATAAATTTTTTTTAAA
AAAAAAAATAAAATAAAATAATTATATAATTTAAAAAAAAAAXXXXXXXXXX

tvgllxwnllk*MFLXWPAHKIISSGNTNVFYRE**iffkkknkik*lynlkk---

Frame A:
tvgllxwnllk*MFLXWPAHKIISSGNTNVFYRE**iffkkknkik*lynlkk---


Frame B:
llaywxgifsnkcf*xgqlik*fhlviqmyfiennkfflkkkik*nnyii*kk---


Frame C:
cwptgmessqinvsxmass*nnfiw*ykcil*riinff*kkk*nkiii*fkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ850 (SHJ850Q) /CSM/SH/SHJ8-C/SHJ850Q.Seq.d/                        186   7e-47
VSA737 (VSA737Q) /CSM/VS/VSA7-B/VSA737Q.Seq.d/                        149   2e-35
AHM332 (AHM332Q) /CSM/AH/AHM3-B/AHM332Q.Seq.d/                         38   0.040
SHB105 (SHB105Q) /CSM/SH/SHB1-A/SHB105Q.Seq.d/                         36   0.16
SFH519 (SFH519Q) /CSM/SF/SFH5-A/SFH519Q.Seq.d/                         36   0.16
SFB229 (SFB229Q) /CSM/SF/SFB2-B/SFB229Q.Seq.d/                         36   0.16
CHP818 (CHP818Q) /CSM/CH/CHP8-A/CHP818Q.Seq.d/                         36   0.16
CHC426 (CHC426Q) /CSM/CH/CHC4-B/CHC426Q.Seq.d/                         36   0.16
AHB236 (AHB236Q) /CSM/AH/AHB2-B/AHB236Q.Seq.d/                         36   0.16
VHJ121 (VHJ121Q) /CSM/VH/VHJ1-A/VHJ121Q.Seq.d/                         34   0.62

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ464931|CJ464931.1 Macaca fascicularis mRNA, clone: QnpA-13843, 5' end, expressed inbrain parietal lobe.    44   0.96   1
AL359974|AL359974.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP13-236A4.    44   0.96   1
AL161654|AL161654.14 Human DNA sequence from clone RP11-59G22 on chromosome 10.    44   0.96   1
AL356309|AL356309.23 Human DNA sequence from clone RP11-205K6 on chromosome 9.    40   1.4    2
AC175815|AC175815.2 Rhinolophus ferrumequinum clone VMRC7-116J5, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   1.9    2
DT238076|DT238076.1 JGI_CAAT10139.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT10139 3', mRNA sequence.    42   3.8    1
DT234085|DT234085.1 JGI_CAAT7978.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT7978 3', mRNA sequence.    42   3.8    1
DT232772|DT232772.1 JGI_CAAT6112.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT6112 3', mRNA sequence.    42   3.8    1
DT231117|DT231117.1 JGI_CAAT5211.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT5211 3', mRNA sequence.    42   3.8    1
DT224374|DT224374.1 JGI_CAAT1140.rev CAAT Pimephales promelas brain 7-8 month adults, males and females pooled (M) Pimephales promelas cDNA clone CAAT1140 3', mRNA sequence.    42   3.8    1

 ***** No hits found ******

Lambda     K      H
   0.317    0.133    0.437

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 148,127,262

 psg: 0.76  gvh: 0.30  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHJ850 is cyt

>SHJ850F.Seq
ACTGTTGGCCTACTGGNATGGAATCTTCTCAAATAAATGTTTCTAGNATGGCCAGCTCAT
AAAATAATTTCATCTGGTAATACAAATGTATTTTATAGAGAATAATAAATTTTTTTTAAA
AAAAAAAATAAAATAAAATAATTATATAATTTAAAAAAAAAANNNNNNNNNN