>SHJ827 (SHJ827Q) /CSM/SH/SHJ8-B/SHJ827Q.Seq.d/
XXXXXXXXXXAAATAGGGGTGCGGCAANTGGAGCAAATAGTGGTGCTGCAACTGGAGCCA
AATAGTGGCGGCTGCAACTGGAGCAAAATAGTGGTGCTGCAACTGGTGCAAAATAGTGGA
AANCAATGCCGCTGTAACTGGTGCTGCAAATGNAAATAATGGCGCTGCAGCTGGAGCAAA
ATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCG
CAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATG
GCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATA
GTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAA
CTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTG
CAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTG
ATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAG

---nrgaaxgansgaatgak*wrlqleqnsgaatgak*wkxmpl*LVLQMXIMALQLEQN
SGAATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANS
GAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSD
AAATAASTTGRNP

Frame A:
---nrgaaxgansgaatgak*wrlqleqnsgaatgak*wkxmpl*LVLQMXIMALQLEQN
SGAATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANS
GAATAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSD
AAATAASTTGRNP


Frame B:
---igvrqxeqivvlqlepnsggcnwskivvlqlvqnsgxqcrcnwcckxk*wrcswski
vvpqllqivvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqiv
vlqllqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlm
lqqpqhqlqaetq


Frame C:
---*gcgxwsk*wccnwsqivaaatgak*wccnwckivexnaavtgaanxnngaaagak*
wcrncck*wcrncck*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*wcck*w
ccncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*c
csnrsinyrqkpk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ827 (SHJ827Q) /CSM/SH/SHJ8-B/SHJ827Q.Seq.d/                       1118   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                       1011   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                       1011   0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/                       1011   0.0
SHA229 (SHA229Q) /CSM/SH/SHA2-B/SHA229Q.Seq.d/                       1011   0.0
CHI407 (CHI407Q) /CSM/CH/CHI4-A/CHI407Q.Seq.d/                       1011   0.0
SHC482 (SHC482Q) /CSM/SH/SHC4-D/SHC482Q.Seq.d/                       1009   0.0
SHC416 (SHC416Q) /CSM/SH/SHC4-A/SHC416Q.Seq.d/                       1009   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                       1005   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                       1005   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence.    30   0.003  3
DT338982|DT338982.1 JBW092C02.b_012.abi Pineapple week 5-10 nematode-infected gall cDNA library Ananas comosus cDNA clone JBW092C02 similar to undiscovered sequence, mRNA sequence.    30   0.003  3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    30   0.008  3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces.    28   0.027  3
AC167065|AC167065.1 Xenopus tropicalis clone ISB1-217D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    28   0.031  3
AY887028|AY887028.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate R66 MAT-1-2 gene, complete cds.    34   0.16   2
AY887027|AY887027.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate YU1 MAT-1-2 gene, complete cds.    34   0.16   2
AY887029|AY887029.1 Ophiostoma novo-ulmi subsp. novo-ulmi isolate V19 MAT-1-2 gene, complete cds.    34   0.16   2
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence.    34   0.17   2
CJ765123|CJ765123.1 Ipomoea nil cDNA clone:jmsf35i02, 3' end.      48   0.23   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    49   1e-04
CP000503_911(CP000503|pid:none) Shewanella sp. W3-18-1, complete...    33   4.2
CP000681_3008(CP000681|pid:none) Shewanella putrefaciens CN-32, ...    33   4.2

 psg: 0.90  gvh: 0.61  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.06  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SHJ827 is cyt

>SHJ827Z.Seq
NNNNNNNNNNAAATAGGGGTGCGGCAANTGGAGCAAATAGTGGTGCTGCAACTGGAGCCA
AATAGTGGCGGCTGCAACTGGAGCAAAATAGTGGTGCTGCAACTGGTGCAAAATAGTGGA
AANCAATGCCGCTGTAACTGGTGCTGCAAATGNAAATAATGGCGCTGCAGCTGGAGCAAA
ATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCG
CAACTGCTGCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATG
GCGCTGCAGCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATA
GTGGTGCTGCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAA
CTGCTGCAAATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTG
CAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTG
ATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAG