>SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/
CTGTTGGCCTACTGGNAAAAAACTATTTAAAAAAAAATAGGAGNAATATAGTTATATATA
TAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATAT
ATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXCTTGAT
CATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATT
CATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGGTGGTACACCAGATGTTGTCT
TCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTC
CAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAA
GAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATC
ACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGT
TTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGG
CTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTG
GTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTAC
TTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAAT
TCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTA
TTCTTTCGGTTCGAAGATGAGAATAAATCATTNACTAACAAATAA

cwptgkklfkkk*exysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGWYTRCCLLLWSRCCSNRSLILG
SHFHSSYVGH*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfgskmrinhxltn

Frame A:
llaywxkti*kkigxi*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---ldhlkmgrsisfi*g*qs*stihssnhyryvlvtrvvhqmlssslvkvlfkplsysw
lsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiks
fipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*v
plllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvplvffrfedenksxtnk*

Frame B:
cwptgkklfkkk*exysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LIILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGWYTRCCLLLWSRCCSNRSLILG
SHFHSSYVGH*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchsysfgskmrinhxltn

Frame C:
vgllxknylkknrxniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---*ss*ngsfhivhlrltklihhsffqplslcschqggtpdvvffsgqgavqtallfla
lisipvmlvikplfmkrfhfqeverkklghheeehddealytghhgeefemgevfvhqvi
htiefvlgavsntasylrlwalslahselssvfweriligqvergnpflafvgfgawlga
svavlllmeslsaflhalrlhwvefqnkfyigdgvrfipysatrilsvrr*e*iix*qi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                       1403   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1368   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1346   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1340   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1326   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1320   0.0
AHA287 (AHA287Q) /CSM/AH/AHA2-D/AHA287Q.Seq.d/                       1320   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1318   0.0
AHB764 (AHB764Q) /CSM/AH/AHB7-C/AHB764Q.Seq.d/                       1318   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1310   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1128   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-13  2
DY983049|DY983049.1 CLSS5348.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5348, mRNA sequence.    80   1e-10  1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   1e-10  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   1e-10  1
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   8e-09  3
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   8e-09  5
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
DT457612|DT457612.1 GH_ON34M24.r GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 3', mRNA sequence.    72   2e-08  1
DT457611|DT457611.1 GH_ON34M24.f GH_ON Gossypium hirsutum cDNA clone GH_ON34M24 5', mRNA sequence.    72   2e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   383   e-121
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   383   e-121
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   203   5e-51
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   197   3e-49
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   197   4e-49
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   197   4e-49
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   197   4e-49
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   197   5e-49
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   196   6e-49
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   196   6e-49

 psg: 0.85  gvh: 0.47  alm: 0.39  top: 0.80  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal

>> prediction for SHJ790 is mit

>SHJ790F.Seq
CTGTTGGCCTACTGGNAAAAAACTATTTAAAAAAAAATAGGAGNAATATAGTTATATATA
TAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATAT
ATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN

>SHJ790Z.Seq
NNNNNNNNNNCTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACA
AAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGGTGGT
ACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTG
GCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCAC
TTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCT
CTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTC
ATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTA
TGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATT
GGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGT
GCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGA
CTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCA
TACAGTGCCACTCGTATTCTTTCGGTTCGAAGATGAGAATAAATCATTNACTAACAAATA
A

>SHJ790P.Seq
CTGTTGGCCTACTGGNAAAAAACTATTTAAAAAAAAATAGGAGNAATATAGTTATATATA
TAACACACAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATAT
ATATATAATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA----------CTTGAT
CATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAAAGTTGATCCACCATT
CATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGGTGGTACACCAGATGTTGTCT
TCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTC
CAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAA
GAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATC
ACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGT
TTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGG
CTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTG
GTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTAC
TTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAAT
TCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTA
TTCTTTCGGTTCGAAGATGAGAATAAATCATTNACTAACAAATAA