SHJ789
Library SH
(Link to library)
Clone ID SHJ789
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14650-1
Original site URL
Representative seq. ID SHJ789P
(Link to Original site)
Representative DNA sequence
>SHJ789 (SHJ789Q) /CSM/SH/SHJ7-D/SHJ789Q.Seq.d/
CTGTTGGCCTACTGGAACATTCATTATTAAATAAAGAACAATTAGAACAAATGAAAGATA
ATAGTAGTTTTTCAGAAGCAGAACTTAAAAAATTATATAGAAGATTCCAAATGTTGGATA
AAGATGGGTCAGGTACATTAACAACTGATGAATTCTTATCTATACCAGATTTAGCATTAA
ACCCACTTTTAGAAAGAGTTATTCAAATCTTTGATCAAAATAAAGATAATGAAATTGAAT
TCTCTGAATTTGTTGGTACACTTGCAACACTCTCCCATAAAGGTACAAAAGAAGATAAAT
TAAAATTCCTTTTCCAAATTTATGATATTGATTGTGATGGATTTATTAGTAATGGTGAAT
TATTCCAAGTTTTAAAAATGATGGTTGGTACCAATTTAAATGATGTACAACTTCAACAAA
TTGTTGATAAAACTATTATTGAAGGTGATTATGATAAAGATGGTAAAATTTCATTTGATG
AATTCATTCATATGATTGGTAATCAAGAAGGAATAGAAGAAAAACTTAGCGTAAATTGGT
CAGAATAAAATAAAATAAAATAAAATTATATTAXXXXXXXXXXAACATTCATTATTAAAT
AAAGAACAATTAGAACAAATGAAAGATAATAGTAGTTTTTCAGAAGCAGAACTTAAAAAA
TTATATAGAAGATTCCAAATGTTGGATAAAGATGGGTCAGGTACATTAACAACTGATGAA
TTCTTATCTATACCAGATTTAGCATTAAACCCACTTTTAGAAAGAGTTATTCAAATCTTT
GATCAAAATAAAGATAATGAAATTGAATTCTCTGAATTTGTTGGTACACTTGCAACACTC
TCCCATAAAGGTACAAAAGAAGATAAATTAAAATTCCTTTTCCAAATTTATGATATTGAT
TGTGATGGATTTATTAGTAATGGTGAATTATTCCAAGTTTTAAAAATGATGGTTGGTACC
AATTTAAATGATGTACAACTTCAACAAATTGTTGATAAAACTATTATTGAAGGTGATTAT
GATAAAGATGGTAAAATTTCATTTGATGAATTCATTCATATGATTGGTAATCAAGAAGGA
AATAGAAAAAAAAANAA
sequence update 2002.10.25
Translated Amino Acid sequence
cwptgtfiik*rtirtner***ffrsrt*kii*kipnvg*rwvryinn**iliytrfsik
ptfrksysnl*sk*r**n*il*icwytcntlp*rykrr*ikipfpnl*y*l*wiy**w*i
ipsfkndgwyqfk*cttstnc**nyy*r*l**rw*nfi**ihsydw*srrnrrkt*rklv
rik*NKIKLY---

---HSLLNKEQLEQMKDNSSFSEAELKKLYRRFQMLDKDGSGTLTTDEFLSIPDLALNPL
LERVIQIFDQNKDNEIEFSEFVGTLATLSHKGTKEDKLKFLFQIYDIDCDGFISNGELFQ
VLKMMVGTNLNDVQLQQIVDKTIIEGDYDKDGKISFDEFIHMIGNQEGNRKKX


Translated Amino Acid sequence (All Frames)
Frame A:
llaywnihy*iknn*nk*kiivvfqkqnlknyiedskcwikmgqvh*qlmnsylyqi*h*
thf*kelfkslikikimklnslnllvhlqhspikvqkkin*nsfskfmilivmdllvmvn
yskf*k*wlvpi*mmynfnklliklllkvimikmvkfhlmnsfi*lvikke*kknla*ig
qnkik*nkiil---

---nihy*iknn*nk*kiivvfqkqnlknyiedskcwikmgqvh*qlmnsylyqi*h*th
f*kelfkslikikimklnslnllvhlqhspikvqkkin*nsfskfmilivmdllvmvnys
kf*k*wlvpi*mmynfnklliklllkvimikmvkfhlmnsfi*lvikkeiekkx

Frame B:
cwptgtfiik*rtirtner***ffrsrt*kii*kipnvg*rwvryinn**iliytrfsik
ptfrksysnl*sk*r**n*il*icwytcntlp*rykrr*ikipfpnl*y*l*wiy**w*i
ipsfkndgwyqfk*cttstnc**nyy*r*l**rw*nfi**ihsydw*srrnrrkt*rklv
rik*NKIKLY---

---tfiik*rtirtner***ffrsrt*kii*kipnvg*rwvryinn**iliytrfsikpt
frksysnl*sk*r**n*il*icwytcntlp*rykrr*ikipfpnl*y*l*wiy**w*iip
sfkndgwyqfk*cttstnc**nyy*r*l**rw*nfi**ihsydw*srrk*kkkx

Frame C:
vgllehsllnkeqleqmkdnssfseaelkklyrrfqmldkdgsgtlttdeflsipdlaln
pllerviqifdqnkdneiefsefvgtlatlshkgtkedklkflfqiydidcdgfisngel
fqvlkmmvgtnlndvqlqqivdktiiegdydkdgkisfdefihmignqegieeklsvnws
e*nkik*nyi---

---HSLLNKEQLEQMKDNSSFSEAELKKLYRRFQMLDKDGSGTLTTDEFLSIPDLALNPL
LERVIQIFDQNKDNEIEFSEFVGTLATLSHKGTKEDKLKFLFQIYDIDCDGFISNGELFQ
VLKMMVGTNLNDVQLQQIVDKTIIEGDYDKDGKISFDEFIHMIGNQEGNRKKX

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHJ789 (SHJ789Q) /CSM/SH/SHJ7-D/SHJ789Q.Seq.d/ 1076 0.0
SSC672 (SSC672Q) /CSM/SS/SSC6-C/SSC672Q.Seq.d/ 997 0.0
SSC736 (SSC736Q) /CSM/SS/SSC7-B/SSC736Q.Seq.d/ 987 0.0
SSA663 (SSA663Q) /CSM/SS/SSA6-C/SSA663Q.Seq.d/ 977 0.0
SSF837 (SSF837Q) /CSM/SS/SSF8-B/SSF837Q.Seq.d/ 920 0.0
SSC734 (SSC734Q) /CSM/SS/SSC7-B/SSC734Q.Seq.d/ 876 0.0
SSI174 (SSI174Q) /CSM/SS/SSI1-D/SSI174Q.Seq.d/ 656 0.0
SSB392 (SSB392Q) /CSM/SS/SSB3-D/SSB392Q.Seq.d/ 466 e-130
CHL343 (CHL343Q) /CSM/CH/CHL3-B/CHL343Q.Seq.d/ 46 0.001
SFA258 (SFA258Q) /CSM/SF/SFA2-C/SFA258Q.Seq.d/ 42 0.018

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ301668|AJ301668.3 Dictyostelium discoideum cnbA gene for calcineurin B. 470 0.0 4
DN314640|DN314640.1 PL06018B2E06 cDNA from juvenile hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 80 4e-18 2
DN293678|DN293678.1 PL030014B20C02 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence. 80 4e-18 2
CV862908| calcineurin B [Mizuhopecten yessoensis], mRNA sequence. 74 1e-11 2
CX054798|CX054798.1 taj02b07.y2 Hydra EST UCI 5 ALP Hydra magnipapillata cDNA 5' similar to SW:CALC_RAT Q08044 CALCINEURIN B SUBUNIT ISOFORM 2 ;, mRNA sequence. 74 1e-11 2
BG817765|BG817765.1 ESSU0187 S.scabiei cDNA library Sarcoptes scabiei cDNA clone SAS0247 5', mRNA sequence. 68 1e-11 2
AL388137|AL388137.1 Medicago truncatula EST MtBC46H01R1 : T7 end of clone MtBC46H01 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 52 1e-11 2
AL388136|AL388136.1 Medicago truncatula EST MtBC46H01F1 : T3 end of clone MtBC46H01 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 52 1e-11 2
CB932297|CB932297.1 ri88a12.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to TR:Q20804 Q20804 F55C10.1 PROTEIN. [1] ;, mRNA sequence. 44 3e-10 3
CB830669|CB830669.1 ri19h09.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to TR:Q20804 Q20804 F55C10.1 PROTEIN. [1] ;, mRNA sequence. 44 3e-10 3
dna update 2006. 5.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55G87) RecName: Full=Calcineurin subunit B type 1; AltName: Fu... 350 5e-95
AJ301668_1(AJ301668|pid:none) Dictyostelium discoideum cnbA gene... 349 1e-94
(P42322) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 206 1e-51
(Q6CGE6) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 183 1e-44
AF034089_1(AF034089|pid:none) Neurospora crassa calcineurin subu... 183 1e-44
EF469732_1(EF469732|pid:none) Setosphaeria turcica calcineurin B... 183 1e-44
(P87072) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 183 1e-44
AM270333_12(AM270333|pid:none) Aspergillus niger contig An15c006... 182 1e-44
BT077971_1(BT077971|pid:none) Lepeophtheirus salmonis clone lsal... 182 2e-44
T47245(T47245) calcineurin regulatory chain [imported] - Neurosp... 182 2e-44
protein update 2009. 5.29
PSORT

psg: 0.67 gvh: 0.30 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SHJ789 is nuc

5' end seq. ID SHJ789F
5' end seq.
>SHJ789F.Seq
CTGTTGGCCTACTGGAACATTCATTATTAAATAAAGAACAATTAGAACAAATGAAAGATA
ATAGTAGTTTTTCAGAAGCAGAACTTAAAAAATTATATAGAAGATTCCAAATGTTGGATA
AAGATGGGTCAGGTACATTAACAACTGATGAATTCTTATCTATACCAGATTTAGCATTAA
ACCCACTTTTAGAAAGAGTTATTCAAATCTTTGATCAAAATAAAGATAATGAAATTGAAT
TCTCTGAATTTGTTGGTACACTTGCAACACTCTCCCATAAAGGTACAAAAGAAGATAAAT
TAAAATTCCTTTTCCAAATTTATGATATTGATTGTGATGGATTTATTAGTAATGGTGAAT
TATTCCAAGTTTTAAAAATGATGGTTGGTACCAATTTAAATGATGTACAACTTCAACAAA
TTGTTGATAAAACTATTATTGAAGGTGATTATGATAAAGATGGTAAAATTTCATTTGATG
AATTCATTCATATGATTGGTAATCAAGAAGGAATAGAAGAAAAACTTAGCGTAAATTGGT
CAGAATAAAATAAAATAAAATAAAATTATATTANNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID SHJ789Z
3' end seq.
>SHJ789Z.Seq
NNNNNNNNNNAACATTCATTATTAAATAAAGAACAATTAGAACAAATGAAAGATAATAGT
AGTTTTTCAGAAGCAGAACTTAAAAAATTATATAGAAGATTCCAAATGTTGGATAAAGAT
GGGTCAGGTACATTAACAACTGATGAATTCTTATCTATACCAGATTTAGCATTAAACCCA
CTTTTAGAAAGAGTTATTCAAATCTTTGATCAAAATAAAGATAATGAAATTGAATTCTCT
GAATTTGTTGGTACACTTGCAACACTCTCCCATAAAGGTACAAAAGAAGATAAATTAAAA
TTCCTTTTCCAAATTTATGATATTGATTGTGATGGATTTATTAGTAATGGTGAATTATTC
CAAGTTTTAAAAATGATGGTTGGTACCAATTTAAATGATGTACAACTTCAACAAATTGTT
GATAAAACTATTATTGAAGGTGATTATGATAAAGATGGTAAAATTTCATTTGATGAATTC
ATTCATATGATTGGTAATCAAGAAGGAAATAGAAAAAAAAANAA
Length of 3' end seq. 524
Connected seq. ID SHJ789P
Connected seq.
>SHJ789P.Seq
CTGTTGGCCTACTGGAACATTCATTATTAAATAAAGAACAATTAGAACAAATGAAAGATA
ATAGTAGTTTTTCAGAAGCAGAACTTAAAAAATTATATAGAAGATTCCAAATGTTGGATA
AAGATGGGTCAGGTACATTAACAACTGATGAATTCTTATCTATACCAGATTTAGCATTAA
ACCCACTTTTAGAAAGAGTTATTCAAATCTTTGATCAAAATAAAGATAATGAAATTGAAT
TCTCTGAATTTGTTGGTACACTTGCAACACTCTCCCATAAAGGTACAAAAGAAGATAAAT
TAAAATTCCTTTTCCAAATTTATGATATTGATTGTGATGGATTTATTAGTAATGGTGAAT
TATTCCAAGTTTTAAAAATGATGGTTGGTACCAATTTAAATGATGTACAACTTCAACAAA
TTGTTGATAAAACTATTATTGAAGGTGATTATGATAAAGATGGTAAAATTTCATTTGATG
AATTCATTCATATGATTGGTAATCAAGAAGGAATAGAAGAAAAACTTAGCGTAAATTGGT
CAGAATAAAATAAAATAAAATAAAATTATATTA----------AACATTCATTATTAAAT
AAAGAACAATTAGAACAAATGAAAGATAATAGTAGTTTTTCAGAAGCAGAACTTAAAAAA
TTATATAGAAGATTCCAAATGTTGGATAAAGATGGGTCAGGTACATTAACAACTGATGAA
TTCTTATCTATACCAGATTTAGCATTAAACCCACTTTTAGAAAGAGTTATTCAAATCTTT
GATCAAAATAAAGATAATGAAATTGAATTCTCTGAATTTGTTGGTACACTTGCAACACTC
TCCCATAAAGGTACAAAAGAAGATAAATTAAAATTCCTTTTCCAAATTTATGATATTGAT
TGTGATGGATTTATTAGTAATGGTGAATTATTCCAAGTTTTAAAAATGATGGTTGGTACC
AATTTAAATGATGTACAACTTCAACAAATTGTTGATAAAACTATTATTGAAGGTGATTAT
GATAAAGATGGTAAAATTTCATTTGATGAATTCATTCATATGATTGGTAATCAAGAAGGA
AATAGAAAAAAAAANAA
Length of connected seq. 1087
Full length Seq ID -
Full length Seq. -
Length of full length seq. -